Variant report

Variant	rs698560
Chromosome Location	chr2:189570335-189570336
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10209259	1.00[AMR][1000 genomes]
rs1066767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1066768	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1084169	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1850551	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2660921	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs698558	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs781453	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1842768	chr2:189555506-189635696	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv962045	chr2:189558969-189572331	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2760584	chr2:189564499-189584350	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv437306	chr2:189565261-189584653	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3460377	chr2:189566007-189571105	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3460378	chr2:189566007-189571105	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1003736	chr2:189567044-189579317	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv10209	chr2:189567684-189582997	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1005344	chr2:189567775-189579317	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv10318	chr2:189567840-189573327	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv10179	chr2:189567840-189580339	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1002859	chr2:189567944-189578616	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv1004582	chr2:189567944-189578821	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1003024	chr2:189567944-189578998	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1005771	chr2:189567944-189579317	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1011700	chr2:189567944-189580531	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1006357	chr2:189567944-189581421	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv1011304	chr2:189567944-189583704	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv2421956	chr2:189567956-189579329	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv442844	chr2:189567956-189579329	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv515712	chr2:189569061-189570335	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3693449	chr2:189569061-189579045	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1013932	chr2:189569493-189580531	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
27	nsv1014391	chr2:189569493-189581230	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
28	nsv1010408	chr2:189569493-189581421	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
29	nsv1009763	chr2:189569493-189583704	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
30	nsv1005153	chr2:189569493-189583898	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv2763036	chr2:189569505-189579329	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
32	nsv514111	chr2:189570107-189578507	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189569400-189570400	Enhancers	NHDF-Ad	bronchial
2	chr2:189570200-189570600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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