Variant report

Variant	rs781453
Chromosome Location	chr2:189537642-189537643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10209259	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1066767	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1066768	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1084169	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1850551	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2660921	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs698558	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs698560	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189529400-189539000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:189532800-189539200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:189536600-189539400	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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