Variant report

Variant	rs6985835
Chromosome Location	chr8:59010920-59010921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10504241	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12334505	0.91[EUR][1000 genomes]
rs1507081	0.86[ASN][1000 genomes]
rs16923020	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16923023	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6471682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6980927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003401	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
2	chr8:59004600-59011000	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:59004800-59012400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr8:59008200-59011000	Enhancers	Liver	Liver
5	chr8:59008800-59011600	Enhancers	HepG2	liver
6	chr8:59009400-59020800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr8:59010200-59011000	Enhancers	NHDF-Ad	bronchial
8	chr8:59010200-59011400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:59010400-59011000	Enhancers	Primary B cells from peripheral blood	blood
10	chr8:59010400-59011000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr8:59010400-59011000	Enhancers	Fetal Muscle Trunk	muscle
12	chr8:59010400-59011000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr8:59010400-59011000	Enhancers	Spleen	Spleen
14	chr8:59010400-59011400	Enhancers	Fetal Brain Female	brain
15	chr8:59010400-59011400	Enhancers	Placenta	Placenta
16	chr8:59010400-59011400	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr8:59010400-59011600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:59010400-59011600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr8:59010400-59011600	Enhancers	Fetal Muscle Leg	muscle
20	chr8:59010400-59011600	Enhancers	Lung	lung
21	chr8:59010400-59011600	Enhancers	Right Ventricle	heart
22	chr8:59010600-59011000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:59010600-59011200	Genic enhancers	Fetal Stomach	stomach
24	chr8:59010600-59011200	Active TSS	HSMMtube	muscle
25	chr8:59010600-59011400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:59010600-59011400	Enhancers	GM12878-XiMat	blood
27	chr8:59010800-59011000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr8:59010800-59011000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr8:59010800-59011000	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr8:59010800-59011000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:59010800-59011000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr8:59010800-59011000	Enhancers	Psoas Muscle	Psoas
33	chr8:59010800-59011000	Active TSS	Hela-S3	cervix
34	chr8:59010800-59011000	Enhancers	HSMM	muscle
35	chr8:59010800-59011000	Enhancers	NH-A	brain
36	chr8:59010800-59011200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr8:59010800-59011200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr8:59010800-59011200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
39	chr8:59010800-59011200	Active TSS	Brain Cingulate Gyrus	brain
40	chr8:59010800-59011200	Active TSS	Brain Germinal Matrix	brain
41	chr8:59010800-59011200	Enhancers	Fetal Lung	lung
42	chr8:59010800-59011200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr8:59010800-59011400	Enhancers	H9 Cell Line	embryonic stem cell
44	chr8:59010800-59011400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:59010800-59011400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:59010800-59011400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
47	chr8:59010800-59011400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:59010800-59011400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr8:59010800-59011400	Enhancers	Brain Hippocampus Middle	brain
50	chr8:59010800-59011400	Flanking Active TSS	Left Ventricle	heart

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