Variant report

Variant	rs16923023
Chromosome Location	chr8:58997485-58997486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58980492..58983860-chr8:58994101..58997758,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169122	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10113596	0.82[YRI][hapmap]
rs10504240	0.82[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10504241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12334505	0.91[EUR][1000 genomes]
rs1507081	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs16922983	1.00[JPT][hapmap]
rs16923020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923066	1.00[JPT][hapmap]
rs16923074	1.00[JPT][hapmap]
rs16923080	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs17176439	0.82[CEU][hapmap]
rs56780714	0.94[ASN][1000 genomes]
rs6471678	1.00[JPT][hapmap]
rs6471679	1.00[JPT][hapmap]
rs6471682	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6980927	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6985835	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7003401	0.97[EUR][1000 genomes]
rs72660390	0.94[ASN][1000 genomes]
rs72660402	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58979400-58999600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:58980600-58999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:58983400-59003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:58983600-59001200	Weak transcription	Fetal Kidney	kidney
5	chr8:58984000-59003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr8:58984400-58999200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr8:58984600-59003200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:58984600-59004200	Weak transcription	Brain Hippocampus Middle	brain
9	chr8:58987400-58999200	Weak transcription	Right Atrium	heart
10	chr8:58987400-59003600	Weak transcription	Colon Smooth Muscle	Colon
11	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
12	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
13	chr8:58989400-58999400	Weak transcription	Lung	lung
14	chr8:58990000-59003800	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:58990200-59001200	Weak transcription	Adipose Nuclei	Adipose
16	chr8:58990200-59001200	Weak transcription	Brain Germinal Matrix	brain
17	chr8:58990200-59003600	Weak transcription	Spleen	Spleen
18	chr8:58990400-58999800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr8:58990400-58999800	Weak transcription	Fetal Lung	lung
20	chr8:58990400-59002200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:58990400-59003000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr8:58990400-59003400	Weak transcription	Fetal Brain Female	brain
23	chr8:58990400-59003600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:58990400-59003800	Weak transcription	Fetal Brain Male	brain
25	chr8:58990400-59004400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:58991800-58999400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:58991800-58999400	Weak transcription	Left Ventricle	heart
28	chr8:58991800-58999600	Weak transcription	NHDF-Ad	bronchial
29	chr8:58992000-59004800	Weak transcription	HSMMtube	muscle
30	chr8:58992000-59007000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr8:58992200-58998200	Weak transcription	Liver	Liver
32	chr8:58992200-59010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:58992400-58999000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr8:58992800-58999400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:58993000-59003600	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr8:58993600-58999200	Weak transcription	Fetal Heart	heart
37	chr8:58993800-58999200	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr8:58995000-58998200	Strong transcription	Fetal Muscle Leg	muscle
39	chr8:58996200-58997600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:58996600-59000200	Strong transcription	Fetal Muscle Trunk	muscle
41	chr8:58996800-58999000	Weak transcription	HSMM	muscle
42	chr8:58997200-58997600	Strong transcription	Fetal Stomach	stomach

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