Variant report

Variant	rs16923080
Chromosome Location	chr8:59034364-59034365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10504240	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10504241	1.00[JPT][hapmap]
rs1507080	0.82[CEU][hapmap]
rs1507081	0.82[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs16922983	1.00[JPT][hapmap]
rs16923020	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs16923023	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs16923044	0.82[CEU][hapmap]
rs16923053	0.82[CEU][hapmap]
rs16923066	0.82[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16923074	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17176439	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs59496630	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471678	1.00[JPT][hapmap]
rs6471679	1.00[JPT][hapmap]
rs6471683	0.82[CEU][hapmap]
rs66631237	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72662411	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72662413	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59011400-59035400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
3	chr8:59014800-59034400	Weak transcription	Fetal Brain Female	brain
4	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
5	chr8:59015400-59036400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:59015400-59037000	Weak transcription	Psoas Muscle	Psoas
7	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
8	chr8:59019400-59036800	Weak transcription	Fetal Kidney	kidney
9	chr8:59021800-59040600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:59021800-59044200	Weak transcription	Fetal Lung	lung
11	chr8:59022400-59050000	Weak transcription	Ovary	ovary
12	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:59028000-59040800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr8:59028600-59042000	Weak transcription	Lung	lung
16	chr8:59028800-59040600	Weak transcription	NHDF-Ad	bronchial
17	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:59029400-59035400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:59030000-59034600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:59031000-59035400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:59031200-59034400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr8:59031200-59035000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr8:59031400-59035200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr8:59031400-59035800	Enhancers	HepG2	liver
25	chr8:59031800-59035600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:59032000-59047200	Weak transcription	Liver	Liver
27	chr8:59032000-59049200	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:59032200-59036000	Enhancers	Fetal Heart	heart
29	chr8:59032600-59035400	Weak transcription	Gastric	stomach
30	chr8:59033200-59045800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr8:59033400-59034800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:59033400-59034800	Enhancers	HSMMtube	muscle
33	chr8:59033600-59034800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr8:59033600-59036000	Enhancers	HSMM	muscle
35	chr8:59033600-59036400	Weak transcription	Brain Germinal Matrix	brain
36	chr8:59033800-59034400	Weak transcription	Fetal Muscle Leg	muscle
37	chr8:59033800-59035400	Weak transcription	Left Ventricle	heart
38	chr8:59033800-59035400	Weak transcription	Right Atrium	heart
39	chr8:59033800-59042000	Weak transcription	Fetal Stomach	stomach
40	chr8:59033800-59044800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr8:59033800-59046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:59033800-59050200	Weak transcription	Pancreas	Pancrea
43	chr8:59034000-59034600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
44	chr8:59034000-59035200	Weak transcription	Right Ventricle	heart
45	chr8:59034200-59034400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr8:59034200-59034400	Enhancers	Rectal Smooth Muscle	rectum
47	chr8:59034200-59034600	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr8:59034200-59034800	Enhancers	Muscle Satellite Cultured Cells	--

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