Variant report

Variant	rs1507080
Chromosome Location	chr8:59014020-59014021
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10504240	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs12334505	0.84[ASN][1000 genomes]
rs1507081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs16923044	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16923053	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923066	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16923074	1.00[CEU][hapmap]
rs16923080	0.82[CEU][hapmap]
rs17176439	0.82[CEU][hapmap]
rs17240058	0.95[EUR][1000 genomes]
rs56084388	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56171966	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56780714	0.95[EUR][1000 genomes]
rs57599317	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59496630	0.84[EUR][1000 genomes]
rs6471683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660384	0.95[EUR][1000 genomes]
rs72660388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660390	0.95[EUR][1000 genomes]
rs72660396	0.82[ASN][1000 genomes]
rs72660399	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660400	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660402	0.95[EUR][1000 genomes]
rs7840512	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
2	chr8:59009400-59020800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:59011000-59031600	Weak transcription	Liver	Liver
4	chr8:59011200-59014200	Weak transcription	Fetal Lung	lung
5	chr8:59011200-59014200	Weak transcription	Fetal Stomach	stomach
6	chr8:59011200-59014400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:59011200-59014800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr8:59011400-59014200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:59011400-59014400	Weak transcription	Fetal Brain Female	brain
10	chr8:59011400-59014400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr8:59011400-59019000	Weak transcription	Ovary	ovary
12	chr8:59011400-59021000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:59011400-59028400	Weak transcription	Placenta	Placenta
14	chr8:59011400-59028800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr8:59011400-59035400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:59011600-59014200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:59011600-59014200	Weak transcription	Brain Anterior Caudate	brain
18	chr8:59011600-59014200	Weak transcription	Psoas Muscle	Psoas
19	chr8:59011600-59014200	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:59011600-59014400	Weak transcription	Fetal Brain Male	brain
21	chr8:59011600-59014400	Weak transcription	NH-A	brain
22	chr8:59011600-59014600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:59011600-59015000	Weak transcription	Left Ventricle	heart
24	chr8:59011600-59015200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:59011600-59016200	Weak transcription	Right Ventricle	heart
26	chr8:59011600-59017600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr8:59011600-59017600	Weak transcription	Right Atrium	heart
28	chr8:59011600-59020800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:59011600-59021000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr8:59011600-59021000	Weak transcription	Lung	lung
31	chr8:59011600-59025400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:59011600-59029400	Weak transcription	Adipose Nuclei	Adipose
33	chr8:59011600-59030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr8:59011600-59031800	Weak transcription	Gastric	stomach
35	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
36	chr8:59011800-59014200	Weak transcription	HSMMtube	muscle
37	chr8:59011800-59020400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr8:59011800-59020800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr8:59012000-59014200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:59012600-59014400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr8:59013000-59014400	Weak transcription	Fetal Heart	heart
42	chr8:59013200-59014800	Enhancers	NHDF-Ad	bronchial
43	chr8:59013400-59014800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr8:59013400-59020800	Weak transcription	Fetal Muscle Leg	muscle
45	chr8:59013800-59014800	Enhancers	HSMM	muscle
46	chr8:59014000-59014600	Enhancers	NHLF	lung
47	chr8:59014000-59015000	Enhancers	Muscle Satellite Cultured Cells	--

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