Variant report

Variant	rs72660388
Chromosome Location	chr8:58990728-58990729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58989456..58993031-chr8:59145472..59149096,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10504240	0.90[EUR][1000 genomes]
rs12334505	0.84[ASN][1000 genomes]
rs1507080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1507081	0.95[EUR][1000 genomes]
rs16923044	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16923053	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923066	0.84[EUR][1000 genomes]
rs17240058	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56084388	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56171966	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56780714	0.95[EUR][1000 genomes]
rs57599317	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59496630	0.84[EUR][1000 genomes]
rs6471683	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660377	0.83[AMR][1000 genomes]
rs72660384	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72660390	0.95[EUR][1000 genomes]
rs72660396	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs72660399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660400	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660402	0.95[EUR][1000 genomes]
rs7840512	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58979400-58999600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:58980400-58991400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:58980400-58994400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:58980600-58999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:58980800-58991600	Weak transcription	Osteobl	bone
6	chr8:58980800-58992000	Weak transcription	Fetal Intestine Small	intestine
7	chr8:58983400-59003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:58983600-58993400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr8:58983600-59001200	Weak transcription	Fetal Kidney	kidney
10	chr8:58984000-59003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:58984200-58991600	Weak transcription	NH-A	brain
12	chr8:58984400-58999200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:58984600-58991400	Weak transcription	NHDF-Ad	bronchial
14	chr8:58984600-58991800	Weak transcription	Stomach Mucosa	stomach
15	chr8:58984600-58994400	Weak transcription	Brain Angular Gyrus	brain
16	chr8:58984600-59003200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr8:58984600-59004200	Weak transcription	Brain Hippocampus Middle	brain
18	chr8:58984800-58991400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr8:58984800-58991600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:58984800-58991600	Weak transcription	Pancreas	Pancrea
21	chr8:58987000-58993200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr8:58987400-58999200	Weak transcription	Right Atrium	heart
23	chr8:58987400-59003600	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
25	chr8:58988000-58990800	Strong transcription	HSMM	muscle
26	chr8:58988000-58994200	Strong transcription	Fetal Muscle Leg	muscle
27	chr8:58988200-58991400	Weak transcription	Fetal Heart	heart
28	chr8:58988400-58993800	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr8:58988800-58993200	Enhancers	HepG2	liver
30	chr8:58989000-58993400	Weak transcription	Right Ventricle	heart
31	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
32	chr8:58989400-58999400	Weak transcription	Lung	lung
33	chr8:58989800-58991600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr8:58990000-59003800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr8:58990200-58991400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr8:58990200-58991400	Weak transcription	Ovary	ovary
37	chr8:58990200-58991600	Weak transcription	Fetal Stomach	stomach
38	chr8:58990200-58994400	Weak transcription	Placenta	Placenta
39	chr8:58990200-59001200	Weak transcription	Adipose Nuclei	Adipose
40	chr8:58990200-59001200	Weak transcription	Brain Germinal Matrix	brain
41	chr8:58990200-59003600	Weak transcription	Spleen	Spleen
42	chr8:58990400-58991200	Weak transcription	Left Ventricle	heart
43	chr8:58990400-58991400	Weak transcription	Liver	Liver
44	chr8:58990400-58991400	Weak transcription	HSMMtube	muscle
45	chr8:58990400-58991400	Weak transcription	NHLF	lung
46	chr8:58990400-58991600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr8:58990400-58991600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr8:58990400-58991600	Weak transcription	Brain Anterior Caudate	brain
49	chr8:58990400-58991600	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr8:58990400-58991600	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links