Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10504240	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs1507080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1507081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs16923044	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923053	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16923066	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16923074	1.00[CEU][hapmap]
rs16923080	0.82[CEU][hapmap]
rs17176439	0.82[CEU][hapmap]
rs17240058	0.95[EUR][1000 genomes]
rs56084388	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56780714	0.95[EUR][1000 genomes]
rs57599317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59496630	0.84[EUR][1000 genomes]
rs7003401	0.82[ASN][1000 genomes]
rs72660384	0.95[EUR][1000 genomes]
rs72660388	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660390	0.95[EUR][1000 genomes]
rs72660396	1.00[ASN][1000 genomes]
rs72660399	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660400	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660402	0.95[EUR][1000 genomes]
rs7840512	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
2	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
3	chr8:58992200-59010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:59000000-59010200	Weak transcription	HSMM	muscle
5	chr8:59000000-59010200	Weak transcription	NHDF-Ad	bronchial
6	chr8:59000000-59010800	Weak transcription	Fetal Lung	lung
7	chr8:59000200-59010400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:59000200-59010600	Weak transcription	Right Atrium	heart
9	chr8:59004000-59010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:59004200-59010400	Weak transcription	Left Ventricle	heart
11	chr8:59004400-59010000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:59004400-59010600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:59004600-59011000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:59004800-59012400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:59005000-59010800	Weak transcription	Fetal Brain Male	brain
16	chr8:59008200-59010400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:59008200-59011000	Enhancers	Liver	Liver
18	chr8:59008800-59011600	Enhancers	HepG2	liver
19	chr8:59009400-59020800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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