Variant report

Variant	rs7840512
Chromosome Location	chr8:59007288-59007289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10504240	0.86[EUR][1000 genomes]
rs1507080	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1507081	0.90[EUR][1000 genomes]
rs16923044	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16923053	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17240058	0.90[EUR][1000 genomes]
rs56084388	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171966	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56780714	0.90[EUR][1000 genomes]
rs57599317	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471683	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003401	0.82[ASN][1000 genomes]
rs72660384	0.90[EUR][1000 genomes]
rs72660388	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660390	0.90[EUR][1000 genomes]
rs72660396	1.00[ASN][1000 genomes]
rs72660399	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660400	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660402	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
2	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
3	chr8:58992200-59010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:59000000-59010200	Weak transcription	HSMM	muscle
5	chr8:59000000-59010200	Weak transcription	NHDF-Ad	bronchial
6	chr8:59000000-59010800	Weak transcription	Fetal Lung	lung
7	chr8:59000200-59010400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:59000200-59010600	Weak transcription	Right Atrium	heart
9	chr8:59004000-59010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:59004200-59010400	Weak transcription	Left Ventricle	heart
11	chr8:59004400-59010000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:59004400-59010600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr8:59004600-59011000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:59004800-59012400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:59005000-59010800	Weak transcription	Fetal Brain Male	brain
16	chr8:59007200-59007400	ZNF genes & repeats	Fetal Brain Female	brain
17	chr8:59007200-59008200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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