Variant report

Variant	rs10504240
Chromosome Location	chr8:58999940-58999941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10504241	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1507080	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs1507081	0.82[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16922983	1.00[JPT][hapmap]
rs16923020	0.82[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16923023	0.82[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16923044	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs16923053	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs16923066	0.82[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs16923074	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs16923080	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs17176439	1.00[CEU][hapmap]
rs17240058	0.85[EUR][1000 genomes]
rs56084388	0.90[EUR][1000 genomes]
rs56171966	0.90[EUR][1000 genomes]
rs56780714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57599317	0.90[EUR][1000 genomes]
rs59496630	0.85[EUR][1000 genomes]
rs6471678	1.00[JPT][hapmap]
rs6471679	1.00[JPT][hapmap]
rs6471683	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs72660384	0.85[EUR][1000 genomes]
rs72660388	0.90[EUR][1000 genomes]
rs72660390	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72660399	0.90[EUR][1000 genomes]
rs72660400	0.90[EUR][1000 genomes]
rs72660402	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7840512	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58983400-59003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:58983600-59001200	Weak transcription	Fetal Kidney	kidney
3	chr8:58984000-59003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:58984600-59003200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr8:58984600-59004200	Weak transcription	Brain Hippocampus Middle	brain
6	chr8:58987400-59003600	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
8	chr8:58989200-59014400	Weak transcription	Aorta	Aorta
9	chr8:58990000-59003800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:58990200-59001200	Weak transcription	Adipose Nuclei	Adipose
11	chr8:58990200-59001200	Weak transcription	Brain Germinal Matrix	brain
12	chr8:58990200-59003600	Weak transcription	Spleen	Spleen
13	chr8:58990400-59002200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr8:58990400-59003000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr8:58990400-59003400	Weak transcription	Fetal Brain Female	brain
16	chr8:58990400-59003600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr8:58990400-59003800	Weak transcription	Fetal Brain Male	brain
18	chr8:58990400-59004400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:58992000-59004800	Weak transcription	HSMMtube	muscle
20	chr8:58992000-59007000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:58992200-59010800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:58993000-59003600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr8:58996600-59000200	Strong transcription	Fetal Muscle Trunk	muscle
24	chr8:58999000-59000000	Strong transcription	HSMM	muscle
25	chr8:58999000-59000400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:58999200-59000200	Enhancers	Right Atrium	heart
27	chr8:58999200-59000600	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr8:58999400-59000000	Enhancers	Right Ventricle	heart
29	chr8:58999400-59000200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:58999400-59000200	Strong transcription	Fetal Stomach	stomach
31	chr8:58999400-59000200	Enhancers	Left Ventricle	heart
32	chr8:58999600-59000000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:58999600-59000000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
34	chr8:58999600-59000000	Genic enhancers	Fetal Muscle Leg	muscle
35	chr8:58999600-59000000	Enhancers	NHDF-Ad	bronchial
36	chr8:58999600-59000200	Enhancers	H1 Cell Line	embryonic stem cell
37	chr8:58999600-59000200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:58999600-59000200	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr8:58999600-59000200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr8:58999600-59000400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr8:58999600-59000400	Flanking Active TSS	Liver	Liver
42	chr8:58999600-59000800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr8:58999800-59000000	Enhancers	Fetal Lung	lung
44	chr8:58999800-59000200	Enhancers	H9 Cell Line	embryonic stem cell
45	chr8:58999800-59000200	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr8:58999800-59003200	Weak transcription	Fetal Heart	heart
47	chr8:58999800-59003400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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