Variant report

Variant	rs72660384
Chromosome Location	chr8:58973332-58973333
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58972227..58973828-chr8:58977965..58980354,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10504240	0.85[EUR][1000 genomes]
rs1507080	0.95[EUR][1000 genomes]
rs1507081	0.90[EUR][1000 genomes]
rs16923044	0.95[EUR][1000 genomes]
rs16923053	0.95[EUR][1000 genomes]
rs16923066	0.89[EUR][1000 genomes]
rs17240058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56084388	0.95[EUR][1000 genomes]
rs56171966	0.95[EUR][1000 genomes]
rs56780714	0.90[EUR][1000 genomes]
rs57599317	0.95[EUR][1000 genomes]
rs59496630	0.89[EUR][1000 genomes]
rs6471683	0.95[EUR][1000 genomes]
rs72660377	0.83[AMR][1000 genomes]
rs72660388	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72660390	0.90[EUR][1000 genomes]
rs72660396	1.00[AMR][1000 genomes]
rs72660399	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72660400	0.95[EUR][1000 genomes]
rs72660402	0.90[EUR][1000 genomes]
rs7840512	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
2	chr8:58952200-58986400	Weak transcription	Adipose Nuclei	Adipose
3	chr8:58952800-58979600	Weak transcription	HSMMtube	muscle
4	chr8:58955200-58974400	Weak transcription	Fetal Brain Male	brain
5	chr8:58958000-58979000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:58963600-58978400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:58963800-58978800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr8:58964200-58973400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:58964800-58973400	Weak transcription	NHDF-Ad	bronchial
10	chr8:58965200-58973800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:58965400-58974200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:58966600-58980000	Weak transcription	Ovary	ovary
13	chr8:58968800-58981000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr8:58969800-58973800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:58969800-58979800	Weak transcription	HSMM	muscle
16	chr8:58970000-58978600	Weak transcription	Lung	lung
17	chr8:58970000-58978600	Weak transcription	Right Atrium	heart
18	chr8:58970000-58979000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr8:58970200-58975400	Weak transcription	Right Ventricle	heart
20	chr8:58970400-58973400	Weak transcription	Brain Germinal Matrix	brain
21	chr8:58970400-58978800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr8:58970600-58973400	Weak transcription	Fetal Muscle Leg	muscle
23	chr8:58970600-58973400	Weak transcription	Spleen	Spleen
24	chr8:58970600-58973800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr8:58970600-58973800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr8:58970600-58975200	Weak transcription	Fetal Lung	lung
27	chr8:58970600-58975200	Weak transcription	Fetal Stomach	stomach
28	chr8:58970600-58978600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:58970600-58979000	Weak transcription	NH-A	brain
30	chr8:58971000-58977600	Weak transcription	Fetal Kidney	kidney
31	chr8:58971200-58982800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr8:58972600-58974600	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr8:58972600-58976000	Enhancers	Fetal Heart	heart
34	chr8:58973200-58973400	Enhancers	NHLF	lung
35	chr8:58973200-58973600	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:58973200-58973600	Enhancers	Fetal Brain Female	brain
37	chr8:58973200-58973600	Enhancers	Psoas Muscle	Psoas
38	chr8:58973200-58973800	Enhancers	Left Ventricle	heart
39	chr8:58973200-58974200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr8:58973200-58979800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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