Variant report

Variant	rs16923044
Chromosome Location	chr8:59022516-59022517
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10504240	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs1507080	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1507081	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs16923053	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16923066	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16923074	1.00[CEU][hapmap]
rs16923080	0.82[CEU][hapmap]
rs17176439	0.82[CEU][hapmap];1.00[GIH][hapmap]
rs17240058	0.95[EUR][1000 genomes]
rs56084388	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56171966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56780714	0.95[EUR][1000 genomes]
rs57599317	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59496630	0.84[EUR][1000 genomes]
rs6471683	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7003401	0.82[ASN][1000 genomes]
rs72660384	0.95[EUR][1000 genomes]
rs72660388	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660390	0.95[EUR][1000 genomes]
rs72660396	1.00[ASN][1000 genomes]
rs72660399	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660400	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72660402	0.95[EUR][1000 genomes]
rs7840512	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59011000-59031600	Weak transcription	Liver	Liver
2	chr8:59011400-59028400	Weak transcription	Placenta	Placenta
3	chr8:59011400-59028800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr8:59011400-59035400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:59011600-59025400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:59011600-59029400	Weak transcription	Adipose Nuclei	Adipose
7	chr8:59011600-59030800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:59011600-59031800	Weak transcription	Gastric	stomach
9	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
10	chr8:59014600-59025800	Weak transcription	HSMMtube	muscle
11	chr8:59014800-59025000	Weak transcription	NHDF-Ad	bronchial
12	chr8:59014800-59028200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr8:59014800-59034400	Weak transcription	Fetal Brain Female	brain
14	chr8:59015000-59028600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
16	chr8:59015400-59025000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:59015400-59036400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr8:59015400-59037000	Weak transcription	Psoas Muscle	Psoas
19	chr8:59015600-59025800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr8:59015600-59030000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr8:59016600-59033600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
23	chr8:59016800-59029600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr8:59019400-59036800	Weak transcription	Fetal Kidney	kidney
25	chr8:59020200-59032200	Weak transcription	Brain Germinal Matrix	brain
26	chr8:59020600-59032600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr8:59020800-59027200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:59021000-59022800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr8:59021200-59022600	Enhancers	Fetal Heart	heart
30	chr8:59021200-59027200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:59021200-59028000	Weak transcription	Lung	lung
32	chr8:59021400-59027200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr8:59021400-59028200	Weak transcription	Left Ventricle	heart
34	chr8:59021400-59028400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:59021600-59022800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr8:59021600-59033400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:59021800-59025800	Weak transcription	HSMM	muscle
38	chr8:59021800-59040600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr8:59021800-59044200	Weak transcription	Fetal Lung	lung
40	chr8:59022000-59025400	Weak transcription	Fetal Muscle Leg	muscle
41	chr8:59022000-59025400	Weak transcription	Right Ventricle	heart
42	chr8:59022200-59024800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr8:59022400-59027400	Weak transcription	Fetal Stomach	stomach
44	chr8:59022400-59028600	Weak transcription	Right Atrium	heart
45	chr8:59022400-59050000	Weak transcription	Ovary	ovary

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