Variant report

Variant	rs72662411
Chromosome Location	chr8:59041336-59041337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16923066	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16923074	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16923080	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17176439	0.95[EUR][1000 genomes]
rs59496630	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66631237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72662413	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59011600-59044800	Weak transcription	Spleen	Spleen
2	chr8:59015200-59058200	Weak transcription	Aorta	Aorta
3	chr8:59016600-59046200	Weak transcription	Fetal Brain Male	brain
4	chr8:59021800-59044200	Weak transcription	Fetal Lung	lung
5	chr8:59022400-59050000	Weak transcription	Ovary	ovary
6	chr8:59026000-59050600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:59026200-59049800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr8:59028600-59042000	Weak transcription	Lung	lung
9	chr8:59029000-59058000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr8:59032000-59047200	Weak transcription	Liver	Liver
11	chr8:59032000-59049200	Weak transcription	Brain Hippocampus Middle	brain
12	chr8:59033200-59045800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:59033800-59042000	Weak transcription	Fetal Stomach	stomach
14	chr8:59033800-59044800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr8:59033800-59046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:59033800-59050200	Weak transcription	Pancreas	Pancrea
17	chr8:59034800-59042200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:59034800-59054200	Weak transcription	Fetal Brain Female	brain
19	chr8:59035600-59043000	Weak transcription	HSMMtube	muscle
20	chr8:59035800-59041600	Weak transcription	Right Ventricle	heart
21	chr8:59035800-59042200	Weak transcription	Gastric	stomach
22	chr8:59035800-59044800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr8:59036000-59042000	Weak transcription	Fetal Muscle Leg	muscle
24	chr8:59036000-59044600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:59036200-59043600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:59036800-59042800	Weak transcription	HepG2	liver
27	chr8:59037200-59049200	Weak transcription	Brain Substantia Nigra	brain
28	chr8:59037800-59042000	Weak transcription	Right Atrium	heart
29	chr8:59040200-59044000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr8:59040600-59041400	Enhancers	NHDF-Ad	bronchial
31	chr8:59040600-59041800	Enhancers	Primary hematopoietic stem cells	blood
32	chr8:59040600-59042000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:59040600-59042000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr8:59040600-59042000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:59040800-59041600	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr8:59040800-59041800	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr8:59040800-59041800	Genic enhancers	HSMM	muscle
38	chr8:59040800-59042000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr8:59040800-59044000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr8:59040800-59045200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr8:59041000-59041400	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr8:59041000-59041600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr8:59041000-59041800	Weak transcription	Left Ventricle	heart
44	chr8:59041000-59041800	Weak transcription	GM12878-XiMat	blood
45	chr8:59041000-59042000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr8:59041000-59042000	Weak transcription	Placenta	Placenta
47	chr8:59041000-59043200	Enhancers	Fetal Heart	heart
48	chr8:59041000-59044800	Weak transcription	Psoas Muscle	Psoas
49	chr8:59041200-59041400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr8:59041200-59041400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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