Variant report

Variant	rs6986228
Chromosome Location	chr8:112809521-112809522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:112248265..112249043-chr8:112809213..112809738,2	MCF-7	breast:
2	chr8:112437770..112438280-chr8:112809131..112809707,2	MCF-7	breast:
3	chr8:112456153..112457084-chr8:112809101..112810085,7	MCF-7	breast:
4	chr8:112455862..112457106-chr8:112809020..112809893,6	MCF-7	breast:
5	chr8:112438643..112439991-chr8:112809151..112809703,4	MCF-7	breast:
6	chr8:112439221..112439930-chr8:112809136..112809948,2	MCF-7	breast:
7	chr8:112471086..112471839-chr8:112809518..112810102,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253103	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11988502	0.89[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11995641	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11997292	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11998601	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16882564	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16882739	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16882778	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs57050311	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7006187	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73324326	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73324332	0.86[EUR][1000 genomes]
rs73324345	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73324393	0.84[EUR][1000 genomes]
rs73324398	0.84[EUR][1000 genomes]
rs73336401	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73338307	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73338319	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73340329	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815869	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7816226	0.84[EUR][1000 genomes]
rs7836329	0.89[CEU][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7838629	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7843079	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027070	chr8:112490160-112844323	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv6349	chr8:112803284-112840636	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112809400-112809600	Enhancers	Fetal Kidney	kidney
2	chr8:112809400-112809800	Enhancers	Brain Anterior Caudate	brain
3	chr8:112809400-112809800	Active TSS	Fetal Brain Male	brain

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