Variant report

Variant	rs73324398
Chromosome Location	chr8:112901802-112901803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11995641	0.84[EUR][1000 genomes]
rs11995955	0.86[EUR][1000 genomes]
rs1380864	0.86[EUR][1000 genomes]
rs16882564	0.84[EUR][1000 genomes]
rs16882739	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16882778	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16882989	0.86[EUR][1000 genomes]
rs1979318	0.86[EUR][1000 genomes]
rs28767509	0.86[EUR][1000 genomes]
rs6986228	0.84[EUR][1000 genomes]
rs7006187	0.84[EUR][1000 genomes]
rs73324326	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73324332	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73324345	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73324393	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73326255	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73340329	0.84[EUR][1000 genomes]
rs7812825	0.84[EUR][1000 genomes]
rs7815869	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7816226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
6	nsv6350	chr8:112864932-112909643	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112901600-112906600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr8:112901800-112907200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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