The 2.0 version of rSNPBase

Variant report

Variant rs698954
Chromosome Location chr1:95342372-95342373
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:95329000-95385000 Weak transcription Colonic Mucosa Colon
2 chr1:95330000-95344200 Strong transcription Fetal Intestine Large intestine
3 chr1:95330600-95343400 Strong transcription Rectal Mucosa Donor 29 rectum
4 chr1:95330600-95348000 Weak transcription HepG2 liver
5 chr1:95332600-95344600 Strong transcription Duodenum Mucosa Duodenum
6 chr1:95333200-95343400 Strong transcription Rectal Mucosa Donor 31 rectum
7 chr1:95333200-95370000 Weak transcription Small Intestine intestine
8 chr1:95334200-95344200 Strong transcription Fetal Intestine Small intestine
9 chr1:95336600-95342800 Enhancers Fetal Muscle Leg muscle
10 chr1:95336800-95342600 Strong transcription Sigmoid Colon Sigmoid Colon
11 chr1:95337600-95349000 Weak transcription Fetal Kidney kidney
12 chr1:95337800-95344400 Enhancers HSMMtube muscle
13 chr1:95338000-95342400 Enhancers Breast Myoepithelial Primary Cells Breast
14 chr1:95338200-95342600 Enhancers HUVEC blood vessel
15 chr1:95338200-95344000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:95338600-95342800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr1:95339200-95346400 Weak transcription Fetal Adrenal Gland Adrenal Gland
18 chr1:95339800-95342800 Enhancers Esophagus oesophagus
19 chr1:95339800-95349400 Weak transcription Aorta Aorta
20 chr1:95340000-95343600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:95340200-95348800 Weak transcription Brain Hippocampus Middle brain
22 chr1:95340200-95349200 Weak transcription Fetal Brain Male brain
23 chr1:95340200-95349200 Weak transcription Rectal Smooth Muscle rectum
24 chr1:95340200-95361200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
25 chr1:95340400-95344000 Strong transcription Fetal Stomach stomach
26 chr1:95340400-95346200 Weak transcription Brain Anterior Caudate brain
27 chr1:95340600-95342600 Enhancers HMEC breast
28 chr1:95340600-95343400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
29 chr1:95341000-95347800 Weak transcription Pancreas Pancrea
30 chr1:95341000-95348800 Weak transcription Stomach Mucosa stomach
31 chr1:95341200-95342800 Strong transcription Gastric stomach
32 chr1:95341400-95342400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
33 chr1:95341400-95342400 Enhancers NH-A brain
34 chr1:95341600-95342600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:95341800-95342400 Weak transcription Fetal Muscle Trunk muscle
36 chr1:95341800-95342400 Enhancers Osteobl bone
37 chr1:95341800-95343000 Enhancers Placenta Amnion Placenta Amnion
38 chr1:95342000-95342400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr1:95342000-95342600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:95342000-95342600 Enhancers NHEK skin
41 chr1:95342200-95343200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015