Variant report

Variant	rs698970
Chromosome Location	chr1:95361119-95361120
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95357972..95361717-chr1:95362316..95366848,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1146466	1.00[EUR][1000 genomes]
rs1146468	1.00[EUR][1000 genomes]
rs1265173	1.00[EUR][1000 genomes]
rs1265174	1.00[EUR][1000 genomes]
rs1269729	1.00[EUR][1000 genomes]
rs1832961	1.00[EUR][1000 genomes]
rs2766009	1.00[EUR][1000 genomes]
rs2797627	1.00[EUR][1000 genomes]
rs4083970	1.00[EUR][1000 genomes]
rs4245664	1.00[ASW][hapmap]
rs56785527	1.00[EUR][1000 genomes]
rs6691935	1.00[EUR][1000 genomes]
rs698954	1.00[AMR][1000 genomes]
rs72964574	1.00[EUR][1000 genomes]
rs72964575	1.00[EUR][1000 genomes]
rs7543891	1.00[EUR][1000 genomes]
rs859049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs859056	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs859059	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs859083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs943200	1.00[EUR][1000 genomes]

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95333200-95370000	Weak transcription	Small Intestine	intestine
3	chr1:95340200-95361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:95343400-95361400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:95349800-95364200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:95350200-95361400	Weak transcription	A549	lung
7	chr1:95350400-95361200	Weak transcription	Fetal Brain Male	brain
8	chr1:95350400-95368800	Weak transcription	Spleen	Spleen
9	chr1:95350400-95378200	Weak transcription	Brain Angular Gyrus	brain
10	chr1:95351400-95361200	Weak transcription	Brain Anterior Caudate	brain
11	chr1:95352000-95361200	Weak transcription	Right Ventricle	heart
12	chr1:95352400-95361200	Weak transcription	Ovary	ovary
13	chr1:95353400-95373600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:95353600-95361200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr1:95353800-95363400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr1:95353800-95373600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr1:95354600-95367800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr1:95355000-95375200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr1:95355200-95373000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr1:95355800-95364400	Strong transcription	Fetal Intestine Large	intestine
21	chr1:95356000-95363400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:95356000-95363800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr1:95356000-95365400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:95356000-95370200	Strong transcription	Fetal Muscle Trunk	muscle
25	chr1:95356000-95370800	Strong transcription	Duodenum Mucosa	Duodenum
26	chr1:95356200-95375000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr1:95356400-95363800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr1:95356600-95364200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr1:95356600-95364200	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr1:95356600-95364200	Strong transcription	Osteobl	bone
31	chr1:95356800-95369000	Strong transcription	Rectal Mucosa Donor 29	rectum
32	chr1:95356800-95371400	Strong transcription	Liver	Liver
33	chr1:95357400-95364000	Strong transcription	NH-A	brain
34	chr1:95357800-95369000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr1:95357800-95390800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr1:95358000-95361600	Strong transcription	Fetal Stomach	stomach
37	chr1:95358400-95369200	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr1:95358800-95361200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:95358800-95361800	Weak transcription	Stomach Mucosa	stomach
40	chr1:95358800-95363200	Weak transcription	Gastric	stomach
41	chr1:95358800-95363400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr1:95358800-95370600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr1:95359400-95370000	Weak transcription	Pancreas	Pancrea
44	chr1:95359600-95363400	Strong transcription	HSMM	muscle
45	chr1:95359600-95363600	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr1:95359600-95366400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr1:95359600-95368800	Strong transcription	Left Ventricle	heart
48	chr1:95359800-95361200	Genic enhancers	HSMMtube	muscle
49	chr1:95359800-95361600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr1:95359800-95364200	Strong transcription	Rectal Smooth Muscle	rectum

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