Variant report

Variant	rs1146466
Chromosome Location	chr1:95400956-95400957
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95399234..95401768-chr1:95403822..95405346,2	K562	blood:

rs_ID	r²[population]
rs1146468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1265173	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1265174	1.00[EUR][1000 genomes]
rs1269729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1832961	1.00[EUR][1000 genomes]
rs2766009	1.00[EUR][1000 genomes]
rs2797627	1.00[EUR][1000 genomes]
rs4083970	1.00[EUR][1000 genomes]
rs56785527	1.00[EUR][1000 genomes]
rs6691935	1.00[EUR][1000 genomes]
rs698970	1.00[EUR][1000 genomes]
rs72964574	1.00[EUR][1000 genomes]
rs72964575	1.00[EUR][1000 genomes]
rs7543891	1.00[EUR][1000 genomes]
rs859049	1.00[EUR][1000 genomes]
rs859056	1.00[EUR][1000 genomes]
rs859059	1.00[EUR][1000 genomes]
rs859083	1.00[EUR][1000 genomes]
rs943200	1.00[EUR][1000 genomes]

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95393400-95401800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:95393600-95404000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:95394000-95415600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:95395400-95401800	Weak transcription	Brain Anterior Caudate	brain
5	chr1:95395400-95404000	Weak transcription	Brain Angular Gyrus	brain
6	chr1:95395400-95410400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:95395600-95401200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:95395600-95401400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:95395600-95401400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:95395600-95401400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:95395600-95401800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:95395600-95401800	Weak transcription	Colon Smooth Muscle	Colon
13	chr1:95395600-95401800	Weak transcription	Lung	lung
14	chr1:95395600-95401800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr1:95395600-95401800	Weak transcription	NHLF	lung
16	chr1:95395600-95402000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:95395600-95403400	Weak transcription	Right Atrium	heart
18	chr1:95395600-95403800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr1:95395600-95403800	Weak transcription	Gastric	stomach
20	chr1:95395600-95403800	Weak transcription	Right Ventricle	heart
21	chr1:95395600-95404200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr1:95395600-95407000	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr1:95395600-95412400	Weak transcription	Colonic Mucosa	Colon
24	chr1:95395600-95412400	Weak transcription	Pancreas	Pancrea
25	chr1:95395600-95416400	Weak transcription	Brain Hippocampus Middle	brain
26	chr1:95395800-95401400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr1:95395800-95401800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:95395800-95408600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:95396000-95401200	Weak transcription	Fetal Heart	heart
30	chr1:95396000-95403200	Weak transcription	Small Intestine	intestine
31	chr1:95396000-95407800	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr1:95396200-95401800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr1:95396200-95401800	Weak transcription	Fetal Lung	lung
34	chr1:95396600-95401200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr1:95397400-95401800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:95398800-95401800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:95399200-95401400	Enhancers	Brain Germinal Matrix	brain
38	chr1:95399200-95401400	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr1:95399200-95404000	Weak transcription	Adipose Nuclei	Adipose
40	chr1:95399400-95401400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:95399400-95401400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:95399400-95401600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr1:95399400-95401600	Weak transcription	Aorta	Aorta
44	chr1:95399400-95401800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr1:95399400-95401800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:95399400-95401800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr1:95399400-95402400	Weak transcription	HepG2	liver
48	chr1:95399400-95402600	Weak transcription	Liver	Liver
49	chr1:95399400-95403800	Weak transcription	Left Ventricle	heart
50	chr1:95399400-95412200	Weak transcription	Stomach Smooth Muscle	stomach

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