Variant report
| Variant | rs7543891 |
|---|---|
| Chromosome Location | chr1:95570780-95570781 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:95567873..95570804-chr1:95585037..95586661,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000231992 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10783000 | 1.00[EUR][1000 genomes] |
| rs1146466 | 1.00[EUR][1000 genomes] |
| rs1146468 | 1.00[EUR][1000 genomes] |
| rs1265173 | 1.00[EUR][1000 genomes] |
| rs1265174 | 1.00[EUR][1000 genomes] |
| rs1269729 | 1.00[EUR][1000 genomes] |
| rs1832961 | 1.00[EUR][1000 genomes] |
| rs2766009 | 1.00[EUR][1000 genomes] |
| rs2797627 | 1.00[EUR][1000 genomes] |
| rs4075328 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56785527 | 1.00[EUR][1000 genomes] |
| rs6681916 | 1.00[EUR][1000 genomes] |
| rs6682111 | 1.00[EUR][1000 genomes] |
| rs6691935 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6692516 | 1.00[EUR][1000 genomes] |
| rs6695953 | 1.00[EUR][1000 genomes] |
| rs698970 | 1.00[EUR][1000 genomes] |
| rs72964574 | 1.00[EUR][1000 genomes] |
| rs72964575 | 1.00[EUR][1000 genomes] |
| rs859049 | 1.00[EUR][1000 genomes] |
| rs859056 | 1.00[EUR][1000 genomes] |
| rs859059 | 1.00[EUR][1000 genomes] |
| rs859083 | 1.00[EUR][1000 genomes] |
| rs943200 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830636 | chr1:95495849-95703126 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
