Variant report

Variant	rs2797627
Chromosome Location	chr1:95428833-95428834
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:3)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:95416169..95418622-chr1:95427478..95429036,2	K562	blood:
2	chr1:95428163..95430092-chr1:95432273..95433856,2	K562	blood:
3	chr1:95417122..95419452-chr1:95427536..95429071,2	K562	blood:

(count:3 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC44A3-1	chr1:95428535-95429158	XLOC_000304
2	lnc-SLC44A3-1	chr1:95428535-95429158	XLOC_000304
3	lnc-SLC44A3-1	chr1:95428535-95429158	XLOC_000304

No data

rs_ID	r²[population]
rs10783000	1.00[EUR][1000 genomes]
rs1146466	1.00[EUR][1000 genomes]
rs1146468	1.00[EUR][1000 genomes]
rs1265173	1.00[EUR][1000 genomes]
rs1265174	1.00[EUR][1000 genomes]
rs1269729	1.00[EUR][1000 genomes]
rs1832961	1.00[EUR][1000 genomes]
rs2766009	1.00[EUR][1000 genomes]
rs4083970	1.00[EUR][1000 genomes]
rs56785527	1.00[EUR][1000 genomes]
rs6691935	1.00[EUR][1000 genomes]
rs6695953	1.00[EUR][1000 genomes]
rs698970	1.00[EUR][1000 genomes]
rs72964574	1.00[EUR][1000 genomes]
rs72964575	1.00[EUR][1000 genomes]
rs7543891	1.00[EUR][1000 genomes]
rs859049	1.00[EUR][1000 genomes]
rs859056	1.00[EUR][1000 genomes]
rs859059	1.00[EUR][1000 genomes]
rs859083	1.00[EUR][1000 genomes]
rs943200	1.00[EUR][1000 genomes]

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95421600-95429200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:95421600-95429600	Weak transcription	Spleen	Spleen
3	chr1:95422000-95450800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:95427000-95429200	Enhancers	Fetal Intestine Small	intestine
5	chr1:95427600-95429000	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr1:95427600-95429200	Enhancers	Fetal Intestine Large	intestine
7	chr1:95427800-95429000	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr1:95428000-95429000	Flanking Active TSS	Primary hematopoietic stem cells	blood
9	chr1:95428000-95429000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr1:95428000-95429000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
11	chr1:95428000-95429000	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr1:95428000-95429000	Active TSS	Duodenum Smooth Muscle	Duodenum
13	chr1:95428000-95429000	Flanking Active TSS	HUVEC	blood vessel
14	chr1:95428000-95429200	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr1:95428000-95429200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:95428000-95429200	Active TSS	Right Atrium	heart
17	chr1:95428200-95429000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr1:95428200-95429000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
19	chr1:95428200-95429000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:95428200-95429000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr1:95428200-95429000	Active TSS	Brain Angular Gyrus	brain
22	chr1:95428200-95429000	Active TSS	Brain Anterior Caudate	brain
23	chr1:95428200-95429000	Active TSS	Brain Cingulate Gyrus	brain
24	chr1:95428200-95429000	Active TSS	Brain Hippocampus Middle	brain
25	chr1:95428200-95429000	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr1:95428200-95429000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:95428200-95429000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
28	chr1:95428200-95429000	Active TSS	Fetal Lung	lung
29	chr1:95428200-95429000	Flanking Active TSS	Fetal Muscle Leg	muscle
30	chr1:95428200-95429000	Active TSS	Psoas Muscle	Psoas
31	chr1:95428200-95429000	Active TSS	Skeletal Muscle Female	skeletal muscle
32	chr1:95428200-95429000	Active TSS	Stomach Smooth Muscle	stomach
33	chr1:95428200-95429000	Active TSS	Thymus	Thymus
34	chr1:95428200-95429000	Flanking Active TSS	HepG2	liver
35	chr1:95428200-95429000	Flanking Active TSS	NHDF-Ad	bronchial
36	chr1:95428200-95429000	Flanking Active TSS	Osteobl	bone
37	chr1:95428200-95429200	Active TSS	Ovary	ovary
38	chr1:95428200-95429200	Flanking Active TSS	Dnd41	blood
39	chr1:95428400-95429000	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr1:95428400-95429200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr1:95428400-95429200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr1:95428600-95429000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr1:95428600-95429000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr1:95428600-95429000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr1:95428600-95429000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr1:95428600-95429000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
47	chr1:95428600-95429000	Active TSS	Brain Substantia Nigra	brain
48	chr1:95428600-95429000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
49	chr1:95428600-95429000	Flanking Active TSS	GM12878-XiMat	blood
50	chr1:95428600-95429200	Flanking Active TSS	Liver	Liver

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