Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10783000	1.00[EUR][1000 genomes]
rs1146466	1.00[EUR][1000 genomes]
rs1146468	1.00[EUR][1000 genomes]
rs1265173	1.00[EUR][1000 genomes]
rs1265174	1.00[EUR][1000 genomes]
rs1269729	1.00[EUR][1000 genomes]
rs1832961	1.00[EUR][1000 genomes]
rs2766009	1.00[EUR][1000 genomes]
rs2797627	1.00[EUR][1000 genomes]
rs4075328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56785527	1.00[EUR][1000 genomes]
rs6681916	1.00[EUR][1000 genomes]
rs6682111	1.00[EUR][1000 genomes]
rs6692516	1.00[EUR][1000 genomes]
rs6695953	1.00[EUR][1000 genomes]
rs698970	1.00[EUR][1000 genomes]
rs72964574	1.00[EUR][1000 genomes]
rs72964575	1.00[EUR][1000 genomes]
rs7543891	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs859049	1.00[EUR][1000 genomes]
rs859056	1.00[EUR][1000 genomes]
rs859059	1.00[EUR][1000 genomes]
rs859083	1.00[EUR][1000 genomes]
rs943200	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830636	chr1:95495849-95703126	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95563200-95566600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:95563600-95567800	Weak transcription	K562	blood

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