Variant report

Variant	rs6994009
Chromosome Location	chr8:113400483-113400484
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10086302	0.92[CEU][hapmap]
rs10089136	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10089402	0.89[CEU][hapmap]
rs10090328	0.92[CEU][hapmap]
rs10094970	0.92[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes]
rs10097860	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs10099418	0.81[AMR][1000 genomes]
rs1026285	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs1026287	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs1032406	0.92[CEU][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10755908	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs1125202	0.85[CEU][hapmap];0.86[CHB][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11776765	0.85[JPT][hapmap]
rs12115016	0.92[CEU][hapmap]
rs12115151	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs12155759	0.86[JPT][hapmap]
rs12156373	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12676848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1352993	0.89[CEU][hapmap]
rs1388959	0.92[MEX][hapmap];0.81[TSI][hapmap]
rs1388960	0.92[CEU][hapmap]
rs1388961	0.92[CEU][hapmap]
rs1388963	0.81[JPT][hapmap]
rs1388965	0.86[JPT][hapmap]
rs1472166	0.86[JPT][hapmap]
rs1492660	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs1492661	0.92[CEU][hapmap]
rs1492662	0.92[CEU][hapmap]
rs1492665	0.81[AMR][1000 genomes]
rs1492666	0.92[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes]
rs1492670	0.86[JPT][hapmap]
rs1492678	0.81[JPT][hapmap]
rs1552785	0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1602703	0.86[JPT][hapmap]
rs16883510	0.86[JPT][hapmap]
rs1873746	0.86[JPT][hapmap]
rs1993208	0.92[CEU][hapmap]
rs2012465	0.92[CEU][hapmap]
rs2035895	0.86[JPT][hapmap]
rs2035896	0.92[CEU][hapmap]
rs2123492	0.81[AMR][1000 genomes]
rs2131298	0.81[JPT][hapmap];0.80[TSI][hapmap]
rs2883427	0.92[CEU][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs3860881	0.86[CHB][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3950676	0.81[JPT][hapmap]
rs41340951	0.86[JPT][hapmap]
rs41467949	0.81[JPT][hapmap]
rs4469486	0.84[JPT][hapmap]
rs4563913	0.86[JPT][hapmap]
rs4577984	0.81[JPT][hapmap]
rs4876281	0.81[CEU][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap]
rs4876283	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs4876467	0.85[JPT][hapmap]
rs4876468	0.86[JPT][hapmap]
rs4876469	0.86[JPT][hapmap]
rs4876470	0.85[JPT][hapmap]
rs6469413	0.81[JPT][hapmap]
rs6469415	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6469416	0.81[AMR][1000 genomes]
rs7003500	0.81[JPT][hapmap]
rs7463151	0.96[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs768095	0.92[CEU][hapmap]
rs7818132	0.92[CEU][hapmap];0.86[CHB][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7832317	0.86[JPT][hapmap]
rs7838852	0.81[JPT][hapmap]
rs7840922	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7843346	0.92[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap]
rs7844160	0.92[CEU][hapmap]
rs7845628	0.81[JPT][hapmap]
rs7845794	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs9297474	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9649933	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886643	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1022457	chr8:113071774-113811177	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
3	esv2755868	chr8:113282795-113634842	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2753595	chr8:113283214-114190390	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	esv2754232	chr8:113294967-113634842	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:113399400-113410600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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