Variant report

Variant	rs699420
Chromosome Location	chr6:128260934-128260935
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128259450..128262289-chr6:128263884..128266852,3	MCF-7	breast:
2	chr6:128183469..128185798-chr6:128259779..128262240,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1089649	1.00[ASN][1000 genomes]
rs1089651	1.00[ASN][1000 genomes]
rs11154433	1.00[ASW][hapmap]
rs11965321	1.00[YRI][hapmap]
rs12204618	1.00[YRI][hapmap]
rs12213305	1.00[YRI][hapmap]
rs156062	1.00[JPT][hapmap]
rs156063	1.00[JPT][hapmap]
rs198523	1.00[JPT][hapmap]
rs198524	1.00[JPT][hapmap]
rs3903663	1.00[ASW][hapmap]
rs404528	1.00[JPT][hapmap]
rs428016	1.00[JPT][hapmap]
rs699416	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs699417	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs699418	1.00[ASN][1000 genomes]
rs699419	1.00[ASN][1000 genomes]
rs802709	1.00[JPT][hapmap]
rs802712	1.00[JPT][hapmap]
rs802715	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs802755	1.00[ASN][1000 genomes]
rs802756	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128254200-128271400	Weak transcription	Thymus	Thymus
2	chr6:128256200-128261400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:128256400-128261000	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr6:128256600-128261200	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr6:128256600-128261400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr6:128257800-128261000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:128258000-128261000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:128258000-128261400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:128258000-128261400	Enhancers	Osteobl	bone
10	chr6:128258200-128261200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:128258400-128261400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr6:128258600-128261200	Enhancers	NHDF-Ad	bronchial
13	chr6:128258600-128261400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:128259000-128261400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:128259000-128261400	Enhancers	HUVEC	blood vessel
16	chr6:128259200-128261200	Enhancers	Dnd41	blood
17	chr6:128259200-128261400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:128259200-128261400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:128259200-128261400	Enhancers	HepG2	liver
20	chr6:128259400-128261400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:128259600-128261000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:128259600-128261000	Enhancers	Hela-S3	cervix
23	chr6:128259800-128261000	Enhancers	NH-A	brain
24	chr6:128260000-128261400	Enhancers	NHEK	skin
25	chr6:128260200-128261000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:128260200-128261000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr6:128260200-128261000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:128260200-128261000	Enhancers	Brain Cingulate Gyrus	brain
29	chr6:128260200-128261000	Enhancers	HMEC	breast
30	chr6:128260200-128261200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:128260200-128261400	Enhancers	Brain Anterior Caudate	brain
32	chr6:128260200-128261800	Enhancers	Brain Hippocampus Middle	brain
33	chr6:128260400-128261000	Enhancers	NHLF	lung
34	chr6:128260600-128261000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:128260600-128261000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:128260800-128261000	Enhancers	Stomach Mucosa	stomach
37	chr6:128260800-128261200	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr6:128260800-128261400	Enhancers	Brain Substantia Nigra	brain
39	chr6:128260800-128261400	Enhancers	HSMM	muscle

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