Variant report

Variant	rs699598
Chromosome Location	chr12:63361763-63361764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10877947	1.00[AMR][1000 genomes]
rs1250142	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1495030	1.00[AMR][1000 genomes]
rs699620	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73327818	1.00[AMR][1000 genomes]
rs771982	1.00[AMR][1000 genomes]
rs771984	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7967943	1.00[AMR][1000 genomes]
rs968994	1.00[AMR][1000 genomes]
rs983981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63360000-63362800	Enhancers	Stomach Mucosa	stomach
2	chr12:63360800-63362000	Flanking Active TSS	HepG2	liver
3	chr12:63361400-63362600	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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