Variant report

Variant	rs771982
Chromosome Location	chr12:63415223-63415224
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10877947	1.00[AMR][1000 genomes]
rs1250142	1.00[AMR][1000 genomes]
rs1495030	1.00[AMR][1000 genomes]
rs61654750	1.00[AMR][1000 genomes]
rs699598	1.00[AMR][1000 genomes]
rs699620	1.00[AMR][1000 genomes]
rs73327818	1.00[AMR][1000 genomes]
rs771984	1.00[AMR][1000 genomes]
rs7967943	1.00[AMR][1000 genomes]
rs968994	1.00[AMR][1000 genomes]
rs983981	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63411600-63416200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr12:63413400-63416200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:63413400-63416600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr12:63413600-63415800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr12:63414200-63415400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr12:63414400-63415400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:63414600-63415400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr12:63414600-63415400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr12:63414800-63415400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:63414800-63415400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:63414800-63415400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr12:63414800-63415400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr12:63414800-63415400	Enhancers	Osteobl	bone
14	chr12:63415000-63415400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr12:63415000-63415800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:63415000-63418600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr12:63415200-63415400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr12:63415200-63415600	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr12:63415200-63418600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:63415200-63419000	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links