Variant report

Variant	rs6996787
Chromosome Location	chr8:95786528-95786529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10100724	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10100860	0.84[EUR][1000 genomes]
rs11785908	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11996148	0.88[EUR][1000 genomes]
rs13248163	0.81[ASN][1000 genomes]
rs13249787	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13252877	0.92[ASN][1000 genomes]
rs13271653	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13277564	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35769195	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35937656	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4236830	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4268099	0.86[EUR][1000 genomes]
rs4332100	0.87[EUR][1000 genomes]
rs4377930	0.84[EUR][1000 genomes]
rs4448241	0.86[EUR][1000 genomes]
rs4478541	0.84[EUR][1000 genomes]
rs4545065	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4548144	0.85[EUR][1000 genomes]
rs4548145	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4734286	0.81[ASN][1000 genomes]
rs4735323	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4735325	0.84[EUR][1000 genomes]
rs6415569	0.85[EUR][1000 genomes]
rs6415570	0.83[EUR][1000 genomes]
rs6471488	0.82[EUR][1000 genomes]
rs6471489	0.85[EUR][1000 genomes]
rs6471490	0.85[EUR][1000 genomes]
rs6471491	0.84[EUR][1000 genomes]
rs6471493	0.84[EUR][1000 genomes]
rs6471494	0.83[EUR][1000 genomes]
rs6985400	0.84[EUR][1000 genomes]
rs6988572	0.86[EUR][1000 genomes]
rs6988791	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6992217	0.82[EUR][1000 genomes]
rs6999453	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7006999	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7014120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017149	0.88[EUR][1000 genomes]
rs7459539	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7818257	0.81[ASN][1000 genomes]
rs7824040	0.85[EUR][1000 genomes]
rs7837111	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	esv3421327	chr8:95785559-95786782	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3479655	chr8:95785608-95786733	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3479653	chr8:95785630-95786728	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3479654	chr8:95785682-95786650	Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3479656	chr8:95785696-95786648	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6996787	LOC203107	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95733000-95803800	Weak transcription	Psoas Muscle	Psoas
2	chr8:95733000-95805200	Weak transcription	Colonic Mucosa	Colon
3	chr8:95733200-95805000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr8:95733600-95809400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:95733800-95806400	Weak transcription	Fetal Brain Male	brain
6	chr8:95735400-95787800	Weak transcription	Hela-S3	cervix
7	chr8:95740800-95799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:95744000-95790800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr8:95752400-95809200	Weak transcription	NHLF	lung
10	chr8:95752600-95793400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr8:95752600-95805600	Weak transcription	NHEK	skin
12	chr8:95753600-95791200	Weak transcription	Primary B cells from cord blood	blood
13	chr8:95761800-95803600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:95762200-95793600	Weak transcription	Stomach Mucosa	stomach
15	chr8:95766200-95788400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:95767600-95795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:95773200-95804800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr8:95773600-95809400	Weak transcription	HSMMtube	muscle
19	chr8:95773800-95802600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:95774000-95788000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:95774000-95791200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr8:95774000-95798000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:95774200-95792000	Strong transcription	Fetal Intestine Large	intestine
24	chr8:95774400-95791800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr8:95774400-95792000	Strong transcription	Fetal Intestine Small	intestine
26	chr8:95774400-95792000	Strong transcription	Fetal Stomach	stomach
27	chr8:95774400-95792200	Strong transcription	Fetal Muscle Leg	muscle
28	chr8:95774800-95799800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr8:95774800-95803200	Weak transcription	Fetal Heart	heart
30	chr8:95776200-95797800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr8:95776200-95803800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:95776800-95786600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr8:95777000-95787800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr8:95777200-95789600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr8:95777200-95792200	Strong transcription	Fetal Muscle Trunk	muscle
36	chr8:95777400-95804000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr8:95777600-95788000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:95777800-95789200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr8:95778000-95788800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:95778600-95802600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr8:95778800-95788200	Strong transcription	Adipose Nuclei	Adipose
42	chr8:95778800-95788200	Strong transcription	Stomach Smooth Muscle	stomach
43	chr8:95779000-95786600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr8:95779000-95788000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr8:95779000-95792200	Strong transcription	Left Ventricle	heart
46	chr8:95780200-95787400	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr8:95780400-95787400	Strong transcription	Placenta	Placenta
48	chr8:95780800-95808000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr8:95781200-95800800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:95782800-95786600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links