Variant report

Variant	rs7837111
Chromosome Location	chr8:95788666-95788667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10100724	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10100860	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11785908	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11996148	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12543525	0.87[ASN][1000 genomes]
rs13249787	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13271653	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13277564	0.83[EUR][1000 genomes]
rs13282508	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35769195	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35937656	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4236830	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4268099	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4332100	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4377930	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4377931	0.87[ASN][1000 genomes]
rs4398879	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4448241	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4478541	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4545065	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4548144	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4548145	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4735323	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4735325	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6415569	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6415570	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6471488	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471489	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471490	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471491	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471493	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6471494	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6985400	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988572	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988791	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6992217	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6996787	0.83[EUR][1000 genomes]
rs6999453	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7006999	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7014120	0.83[EUR][1000 genomes]
rs7017149	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7824040	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7832492	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840272	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7837111	LOC203107	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95733000-95803800	Weak transcription	Psoas Muscle	Psoas
2	chr8:95733000-95805200	Weak transcription	Colonic Mucosa	Colon
3	chr8:95733200-95805000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr8:95733600-95809400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:95733800-95806400	Weak transcription	Fetal Brain Male	brain
6	chr8:95740800-95799000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:95744000-95790800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:95752400-95809200	Weak transcription	NHLF	lung
9	chr8:95752600-95793400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr8:95752600-95805600	Weak transcription	NHEK	skin
11	chr8:95753600-95791200	Weak transcription	Primary B cells from cord blood	blood
12	chr8:95761800-95803600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:95762200-95793600	Weak transcription	Stomach Mucosa	stomach
14	chr8:95767600-95795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:95773200-95804800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr8:95773600-95809400	Weak transcription	HSMMtube	muscle
17	chr8:95773800-95802600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:95774000-95791200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:95774000-95798000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:95774200-95792000	Strong transcription	Fetal Intestine Large	intestine
21	chr8:95774400-95791800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:95774400-95792000	Strong transcription	Fetal Intestine Small	intestine
23	chr8:95774400-95792000	Strong transcription	Fetal Stomach	stomach
24	chr8:95774400-95792200	Strong transcription	Fetal Muscle Leg	muscle
25	chr8:95774800-95799800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr8:95774800-95803200	Weak transcription	Fetal Heart	heart
27	chr8:95776200-95797800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr8:95776200-95803800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr8:95777200-95789600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr8:95777200-95792200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr8:95777400-95804000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr8:95777800-95789200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr8:95778000-95788800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr8:95778600-95802600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr8:95779000-95792200	Strong transcription	Left Ventricle	heart
36	chr8:95780800-95808000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr8:95781200-95800800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr8:95783400-95798000	Strong transcription	Osteobl	bone
39	chr8:95784000-95790000	Weak transcription	Primary B cells from peripheral blood	blood
40	chr8:95784000-95790600	Weak transcription	Fetal Kidney	kidney
41	chr8:95784200-95801200	Weak transcription	Brain Germinal Matrix	brain
42	chr8:95784800-95789800	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr8:95785000-95789600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr8:95785000-95789600	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr8:95785000-95789600	Weak transcription	NH-A	brain
46	chr8:95785000-95789800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr8:95785000-95790200	Weak transcription	Brain Angular Gyrus	brain
48	chr8:95785000-95790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr8:95785000-95791000	Weak transcription	Primary hematopoietic stem cells	blood
50	chr8:95785000-95791600	Weak transcription	GM12878-XiMat	blood

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