Variant report

Variant	rs6997213
Chromosome Location	chr8:58661241-58661242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM110B-3	chr8:58660500-58662754	XLOC_006809
2	lnc-FAM110B-3	chr8:58660500-58662758	ENSG00000254139

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4404901	1.00[EUR][1000 genomes]
rs56147716	0.82[ASN][1000 genomes]
rs7011465	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7018007	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58658800-58661400	Weak transcription	Spleen	Spleen
2	chr8:58658800-58663000	Weak transcription	HSMMtube	muscle
3	chr8:58658800-58663200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:58659000-58663000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:58660200-58661800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr8:58660400-58661400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:58660400-58661400	Enhancers	Brain Germinal Matrix	brain
8	chr8:58660400-58661400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:58660400-58661400	Flanking Active TSS	Fetal Lung	lung
10	chr8:58660400-58661400	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr8:58660400-58661400	Active TSS	Monocytes-CD14+_RO01746	blood
12	chr8:58660400-58661600	Active TSS	Brain Substantia Nigra	brain
13	chr8:58660400-58661800	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:58660400-58661800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:58660600-58661400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
16	chr8:58660600-58661400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:58660600-58661400	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr8:58660600-58661400	Active TSS	Ovary	ovary
19	chr8:58660600-58661400	Active TSS	Right Atrium	heart
20	chr8:58660600-58661600	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr8:58660600-58661600	Active TSS	Stomach Smooth Muscle	stomach
22	chr8:58660600-58661800	Enhancers	Fetal Brain Female	brain
23	chr8:58660600-58662000	Enhancers	Fetal Brain Male	brain
24	chr8:58660800-58661400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr8:58660800-58661400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:58660800-58661400	Enhancers	Primary B cells from peripheral blood	blood
27	chr8:58660800-58661400	Active TSS	Brain Anterior Caudate	brain
28	chr8:58660800-58661400	Active TSS	Brain Cingulate Gyrus	brain
29	chr8:58660800-58661400	Active TSS	Colon Smooth Muscle	Colon
30	chr8:58660800-58661400	Active TSS	Fetal Muscle Trunk	muscle
31	chr8:58660800-58661400	Active TSS	GM12878-XiMat	blood
32	chr8:58660800-58661400	Active TSS	Osteobl	bone
33	chr8:58660800-58661600	Weak transcription	Aorta	Aorta
34	chr8:58661000-58661400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr8:58661000-58661400	Active TSS	Muscle Satellite Cultured Cells	--
36	chr8:58661000-58661400	Active TSS	Adipose Nuclei	Adipose
37	chr8:58661000-58661400	Active TSS	Brain Hippocampus Middle	brain
38	chr8:58661000-58661400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
39	chr8:58661000-58661400	Active TSS	NHLF	lung
40	chr8:58661000-58661600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:58661000-58661600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr8:58661000-58661600	Weak transcription	Left Ventricle	heart
43	chr8:58661200-58661400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr8:58661200-58661400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:58661200-58661400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr8:58661200-58661400	Active TSS	Rectal Mucosa Donor 31	rectum
47	chr8:58661200-58661400	Enhancers	Thymus	Thymus
48	chr8:58661200-58661400	Flanking Active TSS	NHDF-Ad	bronchial
49	chr8:58661200-58661600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr8:58661200-58661600	Enhancers	Rectal Smooth Muscle	rectum

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