Variant report

Variant	rs56147716
Chromosome Location	chr8:58638278-58638279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4404901	0.84[ASN][1000 genomes]
rs55682750	0.90[EUR][1000 genomes]
rs6986591	0.95[EUR][1000 genomes]
rs6991360	0.83[EUR][1000 genomes]
rs6997213	0.82[ASN][1000 genomes]
rs7011465	0.97[ASN][1000 genomes]
rs7018007	0.82[ASN][1000 genomes]
rs72657186	0.81[EUR][1000 genomes]
rs72657189	0.88[EUR][1000 genomes]
rs72659115	0.95[EUR][1000 genomes]
rs72659116	0.95[EUR][1000 genomes]
rs72659120	0.95[EUR][1000 genomes]
rs72659121	0.95[EUR][1000 genomes]
rs72659122	0.95[EUR][1000 genomes]
rs72659130	0.83[EUR][1000 genomes]
rs72659131	0.95[EUR][1000 genomes]
rs72659132	0.95[EUR][1000 genomes]
rs72659133	0.93[EUR][1000 genomes]
rs72659134	0.95[EUR][1000 genomes]
rs72659138	0.90[EUR][1000 genomes]
rs7816521	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58637400-58638800	Enhancers	Primary T cells from cord blood	blood
2	chr8:58637400-58639400	Enhancers	Dnd41	blood
3	chr8:58637400-58639600	Enhancers	Fetal Thymus	thymus
4	chr8:58637600-58638400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr8:58637800-58638400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:58638000-58639000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:58638200-58638600	Enhancers	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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