Variant report
| Variant | rs55682750 |
|---|---|
| Chromosome Location | chr8:58611381-58611382 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs55718924 | 0.81[EUR][1000 genomes] |
| rs56147716 | 0.90[EUR][1000 genomes] |
| rs56259251 | 0.85[EUR][1000 genomes] |
| rs61193147 | 0.81[EUR][1000 genomes] |
| rs6986591 | 0.95[EUR][1000 genomes] |
| rs6991360 | 0.83[EUR][1000 genomes] |
| rs6992409 | 0.85[EUR][1000 genomes] |
| rs7012716 | 0.85[EUR][1000 genomes] |
| rs72657168 | 0.81[EUR][1000 genomes] |
| rs72657185 | 0.87[EUR][1000 genomes] |
| rs72657186 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72657189 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72657202 | 0.86[AFR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72659115 | 0.95[EUR][1000 genomes] |
| rs72659116 | 0.95[EUR][1000 genomes] |
| rs72659120 | 0.95[EUR][1000 genomes] |
| rs72659121 | 0.95[EUR][1000 genomes] |
| rs72659122 | 0.95[EUR][1000 genomes] |
| rs72659130 | 0.82[EUR][1000 genomes] |
| rs72659131 | 0.95[EUR][1000 genomes] |
| rs72659132 | 0.95[EUR][1000 genomes] |
| rs72659133 | 0.92[EUR][1000 genomes] |
| rs72659134 | 0.95[EUR][1000 genomes] |
| rs72659138 | 0.90[EUR][1000 genomes] |
| rs7816521 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533217 | chr8:57991065-58789001 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv890937 | chr8:58600994-58695807 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:58602000-58616200 | Weak transcription | Aorta | Aorta |
| 2 | chr8:58608400-58614200 | Weak transcription | Pancreas | Pancrea |
