Variant report

Variant	rs55718924
Chromosome Location	chr8:58583989-58583990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11986045	0.88[EUR][1000 genomes]
rs16922305	0.81[EUR][1000 genomes]
rs16922371	0.88[EUR][1000 genomes]
rs16922399	0.88[EUR][1000 genomes]
rs28857234	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28894753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36156385	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55682750	0.81[EUR][1000 genomes]
rs56218904	0.81[EUR][1000 genomes]
rs56259251	0.85[EUR][1000 genomes]
rs57413963	0.88[EUR][1000 genomes]
rs57456024	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58625384	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60023629	0.88[EUR][1000 genomes]
rs61193147	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471633	0.88[EUR][1000 genomes]
rs6471634	0.88[EUR][1000 genomes]
rs6471635	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989311	0.86[EUR][1000 genomes]
rs6992409	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994367	0.86[EUR][1000 genomes]
rs6998927	0.86[EUR][1000 genomes]
rs7003082	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005726	0.86[EUR][1000 genomes]
rs7007404	0.81[EUR][1000 genomes]
rs7009212	0.86[EUR][1000 genomes]
rs7009217	0.86[EUR][1000 genomes]
rs7012716	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657140	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657151	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657154	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657161	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657163	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657168	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657185	0.88[EUR][1000 genomes]
rs72657186	0.90[EUR][1000 genomes]
rs7814032	0.86[EUR][1000 genomes]
rs7821347	0.88[EUR][1000 genomes]
rs7822513	0.88[EUR][1000 genomes]
rs7825239	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831758	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838697	0.81[EUR][1000 genomes]
rs7842185	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58582400-58584200	Weak transcription	Fetal Heart	heart
2	chr8:58583400-58584200	Enhancers	Fetal Stomach	stomach
3	chr8:58583400-58584400	Enhancers	HSMMtube	muscle
4	chr8:58583600-58584000	Enhancers	HSMM	muscle
5	chr8:58583800-58584400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:58583800-58584400	Enhancers	Duodenum Smooth Muscle	Duodenum

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