Variant report

Variant	rs6471634
Chromosome Location	chr8:58500129-58500130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58499798..58502598-chr8:59323213..59325065,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000215114	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11986045	1.00[EUR][1000 genomes]
rs16922305	0.93[EUR][1000 genomes]
rs16922371	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922399	1.00[EUR][1000 genomes]
rs28857234	0.91[EUR][1000 genomes]
rs28894753	0.91[EUR][1000 genomes]
rs36156385	0.91[EUR][1000 genomes]
rs55718924	0.88[EUR][1000 genomes]
rs56218904	0.93[EUR][1000 genomes]
rs57413963	1.00[EUR][1000 genomes]
rs57456024	0.91[EUR][1000 genomes]
rs58625384	0.93[EUR][1000 genomes]
rs60023629	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61193147	0.88[EUR][1000 genomes]
rs6471633	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6471635	0.91[EUR][1000 genomes]
rs6989311	0.98[EUR][1000 genomes]
rs6992409	0.84[EUR][1000 genomes]
rs6994367	0.98[EUR][1000 genomes]
rs6998927	0.98[EUR][1000 genomes]
rs7003082	0.91[EUR][1000 genomes]
rs7005726	0.98[EUR][1000 genomes]
rs7007404	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7009212	0.98[EUR][1000 genomes]
rs7009217	0.98[EUR][1000 genomes]
rs7012716	0.84[EUR][1000 genomes]
rs72657140	0.91[EUR][1000 genomes]
rs72657151	0.91[EUR][1000 genomes]
rs72657154	0.91[EUR][1000 genomes]
rs72657161	0.93[EUR][1000 genomes]
rs72657163	0.91[EUR][1000 genomes]
rs72657165	0.91[EUR][1000 genomes]
rs72657168	0.88[EUR][1000 genomes]
rs7814032	0.98[EUR][1000 genomes]
rs7821347	1.00[EUR][1000 genomes]
rs7822513	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7825239	0.86[EUR][1000 genomes]
rs7831758	0.93[EUR][1000 genomes]
rs7838697	0.93[EUR][1000 genomes]
rs7842185	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv831322	chr8:58389416-58551242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1015600	chr8:58400271-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1018174	chr8:58404809-58548970	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1032984	chr8:58406263-58548970	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1018076	chr8:58408947-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv611409	chr8:58438221-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv611410	chr8:58452850-58536334	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58494000-58502800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:58499000-58500800	Enhancers	Stomach Mucosa	stomach
3	chr8:58499000-58501200	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr8:58499200-58500200	Enhancers	Pancreas	Pancrea
5	chr8:58499400-58500200	Flanking Active TSS	Liver	Liver
6	chr8:58499400-58500200	Enhancers	Placenta	Placenta
7	chr8:58499400-58500400	Enhancers	Brain Hippocampus Middle	brain
8	chr8:58499400-58500600	Enhancers	Fetal Lung	lung
9	chr8:58499400-58500800	Enhancers	Adipose Nuclei	Adipose
10	chr8:58499400-58501000	Enhancers	Duodenum Mucosa	Duodenum
11	chr8:58499400-58501000	Flanking Active TSS	HepG2	liver
12	chr8:58499600-58500200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr8:58499600-58500200	Enhancers	Aorta	Aorta
14	chr8:58499600-58500400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr8:58499600-58500400	Enhancers	Right Atrium	heart
16	chr8:58499600-58500400	Enhancers	GM12878-XiMat	blood
17	chr8:58499600-58500600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr8:58499600-58500800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr8:58499600-58501200	Enhancers	Fetal Muscle Leg	muscle
20	chr8:58499800-58500200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:58499800-58500400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:58499800-58500400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:58499800-58500800	Enhancers	Fetal Stomach	stomach
24	chr8:58499800-58501000	Enhancers	Gastric	stomach
25	chr8:58499800-58504000	Weak transcription	Left Ventricle	heart
26	chr8:58500000-58500400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:58500000-58501200	Enhancers	Fetal Kidney	kidney
28	chr8:58500000-58501200	Enhancers	Pancreatic Islets	Pancreatic Islet

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