Variant report

Variant	rs72657151
Chromosome Location	chr8:58561655-58561656
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11986045	0.91[EUR][1000 genomes]
rs16922305	0.83[EUR][1000 genomes]
rs16922371	0.91[EUR][1000 genomes]
rs16922399	0.91[EUR][1000 genomes]
rs28857234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28894753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36156385	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55718924	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56218904	0.83[EUR][1000 genomes]
rs56259251	0.83[EUR][1000 genomes]
rs57413963	0.91[EUR][1000 genomes]
rs57456024	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58625384	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60023629	0.91[EUR][1000 genomes]
rs61193147	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471633	0.91[EUR][1000 genomes]
rs6471634	0.91[EUR][1000 genomes]
rs6471635	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989311	0.88[EUR][1000 genomes]
rs6992409	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994367	0.88[EUR][1000 genomes]
rs6998927	0.88[EUR][1000 genomes]
rs7003082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005726	0.88[EUR][1000 genomes]
rs7007404	0.83[EUR][1000 genomes]
rs7009212	0.88[EUR][1000 genomes]
rs7009217	0.88[EUR][1000 genomes]
rs7012716	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657154	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657161	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657168	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657185	0.86[EUR][1000 genomes]
rs72657186	0.88[EUR][1000 genomes]
rs7814032	0.88[EUR][1000 genomes]
rs7821347	0.91[EUR][1000 genomes]
rs7822513	0.91[EUR][1000 genomes]
rs7825239	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831758	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838697	0.83[EUR][1000 genomes]
rs7842185	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58559800-58562600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:58560400-58562600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:58560400-58562600	Weak transcription	NHDF-Ad	bronchial
4	chr8:58560800-58562600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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