Variant report

Variant	rs16922399
Chromosome Location	chr8:58514612-58514613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58512585..58515336-chr8:58516943..58518859,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11986045	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922305	0.93[EUR][1000 genomes]
rs16922371	1.00[EUR][1000 genomes]
rs28857234	0.91[EUR][1000 genomes]
rs28894753	0.91[EUR][1000 genomes]
rs36156385	0.91[EUR][1000 genomes]
rs55718924	0.88[EUR][1000 genomes]
rs56218904	0.93[EUR][1000 genomes]
rs57413963	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57456024	0.91[EUR][1000 genomes]
rs58625384	0.93[EUR][1000 genomes]
rs60023629	1.00[EUR][1000 genomes]
rs61193147	0.88[EUR][1000 genomes]
rs6471633	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6471634	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6471635	0.91[EUR][1000 genomes]
rs6989311	0.98[EUR][1000 genomes]
rs6992409	0.84[EUR][1000 genomes]
rs6994367	0.98[EUR][1000 genomes]
rs6998927	0.98[EUR][1000 genomes]
rs7003082	0.91[EUR][1000 genomes]
rs7005726	0.98[EUR][1000 genomes]
rs7007404	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[TSI][hapmap];0.93[EUR][1000 genomes]
rs7009212	0.98[EUR][1000 genomes]
rs7009217	0.98[EUR][1000 genomes]
rs7012716	0.84[EUR][1000 genomes]
rs72657140	0.91[EUR][1000 genomes]
rs72657151	0.91[EUR][1000 genomes]
rs72657154	0.91[EUR][1000 genomes]
rs72657161	0.93[EUR][1000 genomes]
rs72657163	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72657165	0.91[EUR][1000 genomes]
rs72657168	0.88[EUR][1000 genomes]
rs7814032	0.98[EUR][1000 genomes]
rs7821347	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7822513	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7825239	0.86[EUR][1000 genomes]
rs7831758	0.93[EUR][1000 genomes]
rs7838697	0.93[EUR][1000 genomes]
rs7842185	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv831322	chr8:58389416-58551242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1015600	chr8:58400271-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1018174	chr8:58404809-58548970	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1032984	chr8:58406263-58548970	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1018076	chr8:58408947-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv611409	chr8:58438221-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv611410	chr8:58452850-58536334	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs16922399	IFIT3	trans	brain	seeQTL
rs16922399	OAS3	trans	brain	seeQTL
rs16922399	GBP5	trans	brain	seeQTL
rs16922399	IFI44	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58513800-58514800	Enhancers	Colon Smooth Muscle	Colon
2	chr8:58514400-58514800	Enhancers	Fetal Stomach	stomach
3	chr8:58514600-58514800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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