Variant report

Variant	rs28857234
Chromosome Location	chr8:54526463-54526464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11986045	0.91[EUR][1000 genomes]
rs16922305	0.83[EUR][1000 genomes]
rs16922371	0.91[EUR][1000 genomes]
rs16922399	0.91[EUR][1000 genomes]
rs28894753	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36156385	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55718924	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56218904	0.83[EUR][1000 genomes]
rs56259251	0.83[EUR][1000 genomes]
rs57413963	0.91[EUR][1000 genomes]
rs57456024	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58625384	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60023629	0.91[EUR][1000 genomes]
rs61193147	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471633	0.91[EUR][1000 genomes]
rs6471634	0.91[EUR][1000 genomes]
rs6471635	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989311	0.88[EUR][1000 genomes]
rs6992409	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6994367	0.88[EUR][1000 genomes]
rs6998927	0.88[EUR][1000 genomes]
rs7003082	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7005726	0.88[EUR][1000 genomes]
rs7007404	0.83[EUR][1000 genomes]
rs7009212	0.88[EUR][1000 genomes]
rs7009217	0.88[EUR][1000 genomes]
rs7012716	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657151	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657161	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657165	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657168	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657185	0.86[EUR][1000 genomes]
rs72657186	0.88[EUR][1000 genomes]
rs7814032	0.88[EUR][1000 genomes]
rs7821347	0.91[EUR][1000 genomes]
rs7822513	0.91[EUR][1000 genomes]
rs7825239	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831758	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838697	0.83[EUR][1000 genomes]
rs7842185	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1813750	chr8:54471135-54528984	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2758159	chr8:54474589-54737473	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759616	chr8:54474589-54737473	Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv15341	chr8:54510310-54529246	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
5	esv1813772	chr8:54520350-54540531	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1830188	chr8:54520350-54601462	Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv890919	chr8:54521248-54607336	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	esv1812048	chr8:54521590-54529129	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
9	esv1807819	chr8:54521863-54528984	Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54522400-54528800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:54522600-54528200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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