Variant report

Variant	rs56218904
Chromosome Location	chr8:58477062-58477063
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11986045	0.93[EUR][1000 genomes]
rs16922305	1.00[EUR][1000 genomes]
rs16922371	0.93[EUR][1000 genomes]
rs16922399	0.93[EUR][1000 genomes]
rs28857234	0.83[EUR][1000 genomes]
rs28894753	0.83[EUR][1000 genomes]
rs36156385	0.83[EUR][1000 genomes]
rs55718924	0.81[EUR][1000 genomes]
rs57413963	0.93[EUR][1000 genomes]
rs57456024	0.83[EUR][1000 genomes]
rs58625384	0.85[EUR][1000 genomes]
rs60023629	0.93[EUR][1000 genomes]
rs61193147	0.81[EUR][1000 genomes]
rs6471633	0.93[EUR][1000 genomes]
rs6471634	0.93[EUR][1000 genomes]
rs6471635	0.83[EUR][1000 genomes]
rs6989311	0.95[EUR][1000 genomes]
rs6994367	0.95[EUR][1000 genomes]
rs6998927	0.95[EUR][1000 genomes]
rs7003082	0.83[EUR][1000 genomes]
rs7005726	0.95[EUR][1000 genomes]
rs7007404	1.00[EUR][1000 genomes]
rs7009212	0.95[EUR][1000 genomes]
rs7009217	0.95[EUR][1000 genomes]
rs72657140	0.83[EUR][1000 genomes]
rs72657151	0.83[EUR][1000 genomes]
rs72657154	0.83[EUR][1000 genomes]
rs72657161	0.85[EUR][1000 genomes]
rs72657163	0.83[EUR][1000 genomes]
rs72657165	0.83[EUR][1000 genomes]
rs72657168	0.81[EUR][1000 genomes]
rs7814032	0.95[EUR][1000 genomes]
rs7821347	0.93[EUR][1000 genomes]
rs7822513	0.93[EUR][1000 genomes]
rs7831758	0.85[EUR][1000 genomes]
rs7838697	1.00[EUR][1000 genomes]
rs7842185	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890936	chr8:58266339-58564501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv524390	chr8:58305969-58572471	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv518178	chr8:58328635-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv831322	chr8:58389416-58551242	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1015600	chr8:58400271-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1018174	chr8:58404809-58548970	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1032984	chr8:58406263-58548970	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1018076	chr8:58408947-58548970	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv611409	chr8:58438221-58542880	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv611410	chr8:58452850-58536334	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58474000-58477200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:58474400-58477200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:58474600-58477200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:58476000-58478400	Enhancers	HepG2	liver
5	chr8:58476200-58477400	Enhancers	Liver	Liver
6	chr8:58476200-58477600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr8:58476400-58477200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:58476400-58477400	Active TSS	A549	lung
9	chr8:58476400-58477600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:58476400-58477600	Enhancers	NHEK	skin
11	chr8:58476400-58477800	Enhancers	Osteobl	bone
12	chr8:58476400-58478000	Enhancers	NH-A	brain
13	chr8:58476400-58478400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr8:58476400-58478400	Enhancers	HSMM	muscle
15	chr8:58476400-58478600	Enhancers	HSMMtube	muscle
16	chr8:58476600-58477200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:58476600-58477200	Enhancers	Fetal Kidney	kidney
18	chr8:58476600-58477200	Enhancers	Stomach Mucosa	stomach
19	chr8:58476600-58477600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr8:58476600-58477600	Enhancers	Colon Smooth Muscle	Colon
21	chr8:58476600-58477800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr8:58476600-58477800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr8:58476600-58477800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr8:58476600-58477800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:58476600-58478200	Enhancers	NHDF-Ad	bronchial
26	chr8:58476800-58477400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:58476800-58477400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr8:58476800-58477400	Enhancers	Rectal Smooth Muscle	rectum
29	chr8:58476800-58477400	Enhancers	Stomach Smooth Muscle	stomach
30	chr8:58476800-58477600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr8:58476800-58477800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:58476800-58477800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr8:58476800-58478200	Enhancers	H9 Cell Line	embryonic stem cell
34	chr8:58477000-58477600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr8:58477000-58477600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr8:58477000-58477800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:58477000-58478000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr8:58477000-58478400	Enhancers	Placenta Amnion	Placenta Amnion

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