Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55682750	0.95[EUR][1000 genomes]
rs56147716	0.95[EUR][1000 genomes]
rs56259251	0.80[EUR][1000 genomes]
rs6986591	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991360	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992409	0.81[EUR][1000 genomes]
rs7012716	0.81[EUR][1000 genomes]
rs72657185	0.83[EUR][1000 genomes]
rs72657186	0.85[EUR][1000 genomes]
rs72657189	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72657202	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659115	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659116	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659120	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659121	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659122	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659130	0.87[EUR][1000 genomes]
rs72659131	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659132	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659133	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72659138	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7816521	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533217	chr8:57991065-58789001	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv890937	chr8:58600994-58695807	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58651200-58654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:58651600-58653800	Weak transcription	Ovary	ovary
3	chr8:58651800-58658600	Weak transcription	Gastric	stomach
4	chr8:58651800-58660400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:58652000-58653200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:58652200-58654200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr8:58652400-58653200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr8:58652600-58653000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:58652800-58653000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:58652800-58653200	Enhancers	NHDF-Ad	bronchial
11	chr8:58652800-58653600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:58652800-58653600	Enhancers	A549	lung
13	chr8:58652800-58653600	Enhancers	Osteobl	bone
14	chr8:58652800-58654400	Enhancers	NHLF	lung
15	chr8:58652800-58655000	Enhancers	HSMM	muscle

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