Variant report

Variant	rs6999774
Chromosome Location	chr8:1983254-1983255
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10101852	0.84[EUR][1000 genomes]
rs11990732	1.00[ASN][1000 genomes]
rs12550500	1.00[ASN][1000 genomes]
rs13249313	0.84[EUR][1000 genomes]
rs13256075	0.85[EUR][1000 genomes]
rs13268431	0.85[EUR][1000 genomes]
rs13282515	0.85[EUR][1000 genomes]
rs28561745	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28571610	0.82[EUR][1000 genomes]
rs34578829	1.00[ASN][1000 genomes]
rs6999922	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1981400-1985000	Enhancers	Fetal Heart	heart
2	chr8:1982000-1983600	Weak transcription	Right Atrium	heart
3	chr8:1982400-1984200	Weak transcription	Left Ventricle	heart
4	chr8:1982800-1984000	Enhancers	Psoas Muscle	Psoas
5	chr8:1982800-1984200	Bivalent Enhancer	NHEK	skin
6	chr8:1982800-1984600	Enhancers	Pancreas	Pancrea
7	chr8:1982800-1985400	Enhancers	Fetal Muscle Trunk	muscle
8	chr8:1983000-1983400	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr8:1983000-1983400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr8:1983000-1983800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr8:1983000-1983800	Active TSS	Spleen	Spleen
12	chr8:1983000-1984600	Enhancers	Stomach Mucosa	stomach
13	chr8:1983000-1985600	Enhancers	Fetal Muscle Leg	muscle
14	chr8:1983200-1983800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:1983200-1992400	Weak transcription	Right Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links