Variant report

Variant	rs13249313
Chromosome Location	chr8:1990942-1990943
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10089072	0.82[EUR][1000 genomes]
rs10101852	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104822	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105544	1.00[ASN][1000 genomes]
rs10113032	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13256075	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261654	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13264316	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13268431	0.99[EUR][1000 genomes]
rs13282515	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28561745	0.87[EUR][1000 genomes]
rs28571610	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35572206	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4875927	1.00[ASN][1000 genomes]
rs4876235	1.00[ASN][1000 genomes]
rs6558590	1.00[ASN][1000 genomes]
rs6999774	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1983200-1992400	Weak transcription	Right Ventricle	heart
2	chr8:1990600-1991200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:1990800-1992200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
4	chr8:1990800-1993000	Bivalent Enhancer	Fetal Muscle Leg	muscle
5	chr8:1990800-1993200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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