Variant report

Variant	rs4875927
Chromosome Location	chr8:2004380-2004381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10089072	0.86[EUR][1000 genomes]
rs10101852	1.00[ASN][1000 genomes]
rs10104822	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105544	1.00[ASN][1000 genomes]
rs10108246	0.92[EUR][1000 genomes]
rs10113032	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249313	1.00[ASN][1000 genomes]
rs13256075	1.00[ASN][1000 genomes]
rs13261654	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264316	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13282515	1.00[ASN][1000 genomes]
rs28571610	1.00[ASN][1000 genomes]
rs34757246	0.97[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35572206	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4875924	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4876235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876236	0.83[EUR][1000 genomes]
rs6558590	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7463722	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1991600-2005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:1999000-2005400	Weak transcription	Right Atrium	heart
3	chr8:2001000-2006600	Genic enhancers	Skeletal Muscle Male	skeletal muscle
4	chr8:2002400-2010400	Genic enhancers	Skeletal Muscle Female	skeletal muscle
5	chr8:2002600-2007000	Weak transcription	Psoas Muscle	Psoas
6	chr8:2003200-2007400	Genic enhancers	Fetal Muscle Leg	muscle
7	chr8:2003400-2004600	Genic enhancers	Fetal Muscle Trunk	muscle
8	chr8:2003400-2006000	Genic enhancers	Left Ventricle	heart
9	chr8:2004200-2004400	Enhancers	Fetal Heart	heart
10	chr8:2004200-2005400	Weak transcription	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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