Variant report

Variant	rs10105544
Chromosome Location	chr8:1995258-1995259
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:1995237..1997654-chr8:2003942..2005517,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10101852	1.00[ASN][1000 genomes]
rs10104822	1.00[ASN][1000 genomes]
rs10113032	1.00[ASN][1000 genomes]
rs13249313	1.00[ASN][1000 genomes]
rs13256075	1.00[ASN][1000 genomes]
rs13261654	1.00[ASN][1000 genomes]
rs13264316	1.00[ASN][1000 genomes]
rs13282515	1.00[ASN][1000 genomes]
rs28571610	1.00[ASN][1000 genomes]
rs35572206	1.00[ASN][1000 genomes]
rs4875927	1.00[ASN][1000 genomes]
rs4876235	1.00[ASN][1000 genomes]
rs6558590	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1991200-1998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:1991600-2005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:1992000-1995400	Bivalent Enhancer	Fetal Thymus	thymus
4	chr8:1992200-1995600	Bivalent Enhancer	Fetal Stomach	stomach
5	chr8:1992400-1995600	Active TSS	Right Ventricle	heart
6	chr8:1992600-1995600	Active TSS	Psoas Muscle	Psoas
7	chr8:1992600-1996600	Active TSS	Right Atrium	heart
8	chr8:1993200-1995600	Active TSS	Left Ventricle	heart
9	chr8:1993400-1995400	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr8:1993600-1995400	Enhancers	Primary hematopoietic stem cells	blood
11	chr8:1993800-1998200	Weak transcription	Pancreas	Pancrea
12	chr8:1994400-1995400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:1994400-1995600	Enhancers	HSMMtube	muscle
14	chr8:1994400-1996400	Bivalent Enhancer	Hela-S3	cervix
15	chr8:1994400-1996800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:1994600-1995400	Enhancers	HSMM	muscle
17	chr8:1994600-1996200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:1994800-1995600	Weak transcription	Spleen	Spleen
19	chr8:1994800-1998800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:1994800-2000000	Enhancers	Fetal Heart	heart
21	chr8:1995200-1995400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr8:1995200-1995600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
23	chr8:1995200-1995800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
24	chr8:1995200-1996400	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle

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