Variant report

Variant	rs10104822
Chromosome Location	chr8:1994598-1994599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10089072	0.97[EUR][1000 genomes]
rs10101852	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105544	1.00[ASN][1000 genomes]
rs10108246	0.84[EUR][1000 genomes]
rs10113032	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13249313	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13256075	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261654	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264316	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268431	0.84[EUR][1000 genomes]
rs13282515	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28571610	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35572206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4875927	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876235	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6558590	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1991200-1998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:1991600-2005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:1992000-1995400	Bivalent Enhancer	Fetal Thymus	thymus
4	chr8:1992200-1995600	Bivalent Enhancer	Fetal Stomach	stomach
5	chr8:1992400-1995600	Active TSS	Right Ventricle	heart
6	chr8:1992600-1994600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:1992600-1995600	Active TSS	Psoas Muscle	Psoas
8	chr8:1992600-1996600	Active TSS	Right Atrium	heart
9	chr8:1992800-1994800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:1993200-1995200	Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr8:1993200-1995600	Active TSS	Left Ventricle	heart
12	chr8:1993400-1994800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
13	chr8:1993400-1995200	Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr8:1993400-1995400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:1993600-1994800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:1993600-1994800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr8:1993600-1995400	Enhancers	Primary hematopoietic stem cells	blood
18	chr8:1993800-1994600	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:1993800-1994800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:1993800-1994800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
21	chr8:1993800-1998200	Weak transcription	Pancreas	Pancrea
22	chr8:1994000-1995200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:1994200-1994800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr8:1994400-1994600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr8:1994400-1994600	Bivalent Enhancer	Fetal Intestine Small	intestine
26	chr8:1994400-1994600	Flanking Active TSS	HSMM	muscle
27	chr8:1994400-1994800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr8:1994400-1994800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr8:1994400-1994800	Flanking Active TSS	Fetal Heart	heart
30	chr8:1994400-1994800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
31	chr8:1994400-1994800	Enhancers	Spleen	Spleen
32	chr8:1994400-1994800	Bivalent Enhancer	HUVEC	blood vessel
33	chr8:1994400-1995400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr8:1994400-1995600	Enhancers	HSMMtube	muscle
35	chr8:1994400-1996400	Bivalent Enhancer	Hela-S3	cervix
36	chr8:1994400-1996800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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