Variant report

Variant	rs10113032
Chromosome Location	chr8:1996997-1996998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10089072	0.92[EUR][1000 genomes]
rs10101852	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104822	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105544	1.00[ASN][1000 genomes]
rs10108246	0.84[EUR][1000 genomes]
rs13249313	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13256075	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261654	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13264316	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13268431	0.82[EUR][1000 genomes]
rs13282515	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28571610	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35572206	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4875927	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4876235	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6558590	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:1991200-1998200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:1991600-2005400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:1993800-1998200	Weak transcription	Pancreas	Pancrea
4	chr8:1994800-1998800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:1994800-2000000	Enhancers	Fetal Heart	heart
6	chr8:1995400-1998800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:1995400-1998800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:1995600-1998800	Weak transcription	HSMMtube	muscle
9	chr8:1996200-1997200	Weak transcription	Psoas Muscle	Psoas
10	chr8:1996400-1997600	Enhancers	Fetal Muscle Trunk	muscle
11	chr8:1996400-1997600	Enhancers	Left Ventricle	heart
12	chr8:1996400-1998000	Genic enhancers	Fetal Muscle Leg	muscle
13	chr8:1996600-1997200	Weak transcription	Right Atrium	heart
14	chr8:1996800-1997200	Enhancers	Right Ventricle	heart
15	chr8:1996800-1997200	Active TSS	Skeletal Muscle Male	skeletal muscle
16	chr8:1996800-1997200	Active TSS	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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