Variant report

Variant	rs7000642
Chromosome Location	chr8:64428514-64428515
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11774825	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs12546503	0.85[CEU][hapmap];0.95[CHB][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.85[EUR][1000 genomes]
rs1431596	0.91[EUR][1000 genomes]
rs4739096	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4739098	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7007232	0.85[EUR][1000 genomes]
rs7013832	0.91[ASN][1000 genomes]
rs7830002	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs991782	0.85[CEU][hapmap];0.95[CHB][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64427000-64428600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:64427000-64428800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:64427600-64429200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:64427800-64428800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:64427800-64428800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:64428000-64428600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr8:64428000-64429000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:64428000-64429200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr8:64428000-64429400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:64428000-64429400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr8:64428400-64429000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr8:64428400-64429200	Weak transcription	Fetal Brain Male	brain
13	chr8:64428400-64429200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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