Variant report

Variant	rs7001235
Chromosome Location	chr8:50291964-50291965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10104481	1.00[EUR][1000 genomes]
rs1715312	1.00[EUR][1000 genomes]
rs1715339	0.92[EUR][1000 genomes]
rs1715341	0.96[EUR][1000 genomes]
rs56059813	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56133351	0.96[EUR][1000 genomes]
rs56326857	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57268432	1.00[EUR][1000 genomes]
rs57377660	1.00[EUR][1000 genomes]
rs58726997	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60417761	1.00[EUR][1000 genomes]
rs60757483	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61066305	0.89[EUR][1000 genomes]
rs61377938	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61447075	1.00[EUR][1000 genomes]
rs66499384	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72645908	1.00[EUR][1000 genomes]
rs72645914	0.92[EUR][1000 genomes]
rs72645916	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72645917	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73679586	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv890857	chr8:50133485-50469764	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv890858	chr8:50219675-50532935	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv890859	chr8:50253358-50359113	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50291000-50292000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:50291000-50292200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:50291400-50292000	Enhancers	HMEC	breast
4	chr8:50291800-50292600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:50291800-50292800	Weak transcription	Dnd41	blood

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