Variant report

Variant	rs1715339
Chromosome Location	chr8:50424018-50424019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10098245	0.83[EUR][1000 genomes]
rs10098599	0.83[EUR][1000 genomes]
rs10099915	0.83[EUR][1000 genomes]
rs10104481	0.92[EUR][1000 genomes]
rs10104767	0.86[EUR][1000 genomes]
rs12056923	0.80[EUR][1000 genomes]
rs1318749	0.83[EUR][1000 genomes]
rs13277253	0.83[EUR][1000 genomes]
rs1496315	0.86[EUR][1000 genomes]
rs1603399	0.83[EUR][1000 genomes]
rs16910533	0.86[EUR][1000 genomes]
rs1715312	0.92[EUR][1000 genomes]
rs1715341	0.89[EUR][1000 genomes]
rs1908709	0.86[EUR][1000 genomes]
rs28476719	0.83[EUR][1000 genomes]
rs4455843	0.86[EUR][1000 genomes]
rs4587348	0.86[EUR][1000 genomes]
rs56059813	0.92[EUR][1000 genomes]
rs56133351	0.89[EUR][1000 genomes]
rs56269115	0.89[EUR][1000 genomes]
rs56326857	0.92[EUR][1000 genomes]
rs57268432	0.92[EUR][1000 genomes]
rs57377660	0.92[EUR][1000 genomes]
rs57417954	0.86[EUR][1000 genomes]
rs58726997	0.92[EUR][1000 genomes]
rs59722152	0.92[EUR][1000 genomes]
rs59759350	0.86[EUR][1000 genomes]
rs60417761	0.92[EUR][1000 genomes]
rs60757483	0.92[EUR][1000 genomes]
rs60998432	0.86[EUR][1000 genomes]
rs61066305	0.81[EUR][1000 genomes]
rs61377938	0.92[EUR][1000 genomes]
rs61447075	0.92[EUR][1000 genomes]
rs6472567	0.83[EUR][1000 genomes]
rs66499384	0.92[EUR][1000 genomes]
rs6996205	0.83[EUR][1000 genomes]
rs6996381	0.83[EUR][1000 genomes]
rs7001235	0.92[EUR][1000 genomes]
rs7002403	0.83[EUR][1000 genomes]
rs72645908	0.92[EUR][1000 genomes]
rs72645914	0.85[EUR][1000 genomes]
rs72645916	0.92[EUR][1000 genomes]
rs72645917	0.92[EUR][1000 genomes]
rs73570804	1.00[EUR][1000 genomes]
rs73570889	0.92[EUR][1000 genomes]
rs73572931	0.83[EUR][1000 genomes]
rs73572934	0.83[EUR][1000 genomes]
rs73572942	0.86[EUR][1000 genomes]
rs73575139	0.83[EUR][1000 genomes]
rs73679586	1.00[EUR][1000 genomes]
rs7825182	0.86[EUR][1000 genomes]
rs7825327	0.86[EUR][1000 genomes]
rs7825977	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv890857	chr8:50133485-50469764	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv890858	chr8:50219675-50532935	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv890860	chr8:50403271-50520852	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1018394	chr8:50408917-50539597	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757271	chr8:50415233-50592704	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv2759612	chr8:50415233-50657352	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv34838	chr8:50415247-50547507	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1023556	chr8:50415849-50559006	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv539602	chr8:50415849-50559006	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv2758157	chr8:50415863-50657352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv890861	chr8:50416266-50536308	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv890862	chr8:50416266-50542665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50421000-50424400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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