Variant report

Variant	rs73572942
Chromosome Location	chr8:50556473-50556474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10098245	0.83[EUR][1000 genomes]
rs10098599	0.83[EUR][1000 genomes]
rs10099915	0.83[EUR][1000 genomes]
rs10104767	0.86[EUR][1000 genomes]
rs12056923	0.80[EUR][1000 genomes]
rs1318749	0.83[EUR][1000 genomes]
rs13277253	0.83[EUR][1000 genomes]
rs1496315	0.86[EUR][1000 genomes]
rs1603399	0.83[EUR][1000 genomes]
rs16910533	0.86[EUR][1000 genomes]
rs1715339	0.86[EUR][1000 genomes]
rs1908709	0.86[EUR][1000 genomes]
rs28476719	0.83[EUR][1000 genomes]
rs4455843	0.86[EUR][1000 genomes]
rs4587348	0.86[EUR][1000 genomes]
rs56269115	0.89[EUR][1000 genomes]
rs57268432	0.90[AMR][1000 genomes]
rs57417954	0.86[EUR][1000 genomes]
rs59722152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59759350	0.86[EUR][1000 genomes]
rs60998432	0.86[EUR][1000 genomes]
rs6472567	0.83[EUR][1000 genomes]
rs6996205	0.83[EUR][1000 genomes]
rs6996381	0.83[EUR][1000 genomes]
rs7002403	0.83[EUR][1000 genomes]
rs73570804	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73570889	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73572931	0.83[EUR][1000 genomes]
rs73572934	0.83[EUR][1000 genomes]
rs73575139	0.83[EUR][1000 genomes]
rs73679586	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7825182	0.86[EUR][1000 genomes]
rs7825327	0.86[EUR][1000 genomes]
rs7825977	0.83[EUR][1000 genomes]
rs7829956	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2757271	chr8:50415233-50592704	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759612	chr8:50415233-50657352	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1023556	chr8:50415849-50559006	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv539602	chr8:50415849-50559006	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2758157	chr8:50415863-50657352	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv890863	chr8:50430756-50639293	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv890869	chr8:50469764-50558739	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3353749	chr8:50530807-51139242	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50554400-50558200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:50555800-50557000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links