Variant report

Variant	rs7004120
Chromosome Location	chr8:124416695-124416696
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124416051..124418848-chr8:124419770..124421913,2	MCF-7	breast:
2	chr8:124415153..124417409-chr8:124424066..124426465,2	K562	blood:
3	chr8:124412543..124415333-chr8:124416602..124418782,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254294	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10096099	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10102308	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10102861	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12155679	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12155989	0.87[EUR][1000 genomes]
rs28386804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3901852	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56098264	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72709010	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72709014	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72724209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72724211	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72724214	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124409400-124419200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:124409400-124421400	Weak transcription	Right Ventricle	heart
3	chr8:124409400-124424800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:124409400-124427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:124409400-124427600	Weak transcription	A549	lung
6	chr8:124409400-124428000	Weak transcription	Brain Anterior Caudate	brain
7	chr8:124409600-124417800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:124409600-124424600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr8:124409600-124424800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:124409800-124424600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:124409800-124427800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:124414400-124425000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:124414800-124416800	Enhancers	Fetal Heart	heart
14	chr8:124415400-124416800	Enhancers	Liver	Liver
15	chr8:124415600-124418800	Weak transcription	Gastric	stomach
16	chr8:124415800-124416800	Enhancers	Hela-S3	cervix
17	chr8:124415800-124416800	Flanking Active TSS	HepG2	liver
18	chr8:124416200-124424200	Weak transcription	Ovary	ovary
19	chr8:124416200-124424800	Weak transcription	Fetal Intestine Small	intestine
20	chr8:124416200-124425800	Weak transcription	Left Ventricle	heart
21	chr8:124416200-124427800	Weak transcription	Pancreas	Pancrea

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