Variant report

Variant	rs10102308
Chromosome Location	chr8:124441188-124441189
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124406999..124409661-chr8:124439973..124442313,3	MCF-7	breast:
2	chr8:124427319..124431344-chr8:124440107..124444172,5	MCF-7	breast:
3	chr8:124428647..124432680-chr8:124438774..124441647,3	K562	blood:

Variant related genes	Relation type
ENSG00000156802	Chromatin interaction
ENSG00000156795	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10092135	0.82[ASN][1000 genomes]
rs10096099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10102861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155679	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12155989	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12543979	0.88[ASN][1000 genomes]
rs17330287	0.84[ASN][1000 genomes]
rs28386804	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3779985	0.85[ASN][1000 genomes]
rs3847178	0.87[ASN][1000 genomes]
rs3901852	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4460353	0.84[ASN][1000 genomes]
rs4871377	0.88[ASN][1000 genomes]
rs55822628	0.87[ASN][1000 genomes]
rs55896007	0.84[ASN][1000 genomes]
rs56098264	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59493118	0.87[ASN][1000 genomes]
rs62519216	0.81[ASN][1000 genomes]
rs6981304	0.88[ASN][1000 genomes]
rs6986525	0.88[ASN][1000 genomes]
rs7004120	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7008226	0.87[ASN][1000 genomes]
rs7012343	0.88[ASN][1000 genomes]
rs72709010	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72709014	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72724209	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72724211	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72724214	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7833321	0.88[ASN][1000 genomes]
rs7840703	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831449	chr8:124276685-124471740	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv3415547	chr8:124420820-124444289	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124430000-124441400	Weak transcription	Primary B cells from cord blood	blood
2	chr8:124430000-124441600	Weak transcription	Thymus	Thymus
3	chr8:124430000-124443600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr8:124430000-124443800	Weak transcription	Esophagus	oesophagus
5	chr8:124430000-124443800	Weak transcription	Right Ventricle	heart
6	chr8:124430000-124449200	Weak transcription	Small Intestine	intestine
7	chr8:124430000-124450200	Weak transcription	Brain Germinal Matrix	brain
8	chr8:124430200-124441200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:124430200-124441200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr8:124430200-124441400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:124430200-124441400	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:124430200-124441400	Weak transcription	Placenta	Placenta
13	chr8:124430200-124441400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:124430200-124441400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr8:124430200-124441600	Weak transcription	Fetal Brain Female	brain
16	chr8:124430200-124442200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:124430200-124442200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr8:124430200-124442600	Weak transcription	Gastric	stomach
19	chr8:124430200-124443600	Weak transcription	Ovary	ovary
20	chr8:124430200-124443600	Weak transcription	NH-A	brain
21	chr8:124430200-124443800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr8:124430200-124443800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:124430200-124443800	Weak transcription	Primary T cells from cord blood	blood
24	chr8:124430200-124443800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr8:124430200-124443800	Weak transcription	Pancreas	Pancrea
26	chr8:124430200-124443800	Weak transcription	Spleen	Spleen
27	chr8:124430200-124443800	Weak transcription	HSMM	muscle
28	chr8:124430200-124447000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr8:124430200-124448600	Weak transcription	NHEK	skin
30	chr8:124430200-124448600	Weak transcription	NHLF	lung
31	chr8:124430200-124448800	Weak transcription	NHDF-Ad	bronchial
32	chr8:124430200-124449000	Weak transcription	Osteobl	bone
33	chr8:124430200-124449200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:124430200-124449200	Weak transcription	HUVEC	blood vessel
35	chr8:124430200-124455400	Weak transcription	Fetal Kidney	kidney
36	chr8:124430200-124456000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:124430200-124472800	Weak transcription	Colonic Mucosa	Colon
38	chr8:124430200-124484600	Weak transcription	Psoas Muscle	Psoas
39	chr8:124430400-124441200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr8:124430400-124441400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr8:124430400-124441600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr8:124430400-124441600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr8:124430400-124442200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr8:124430400-124442800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr8:124430400-124443200	Weak transcription	Brain Angular Gyrus	brain
46	chr8:124430400-124443800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:124430400-124443800	Weak transcription	A549	lung
48	chr8:124430400-124444000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:124430400-124444000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr8:124430400-124447000	Weak transcription	Muscle Satellite Cultured Cells	--

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