Variant report

Variant	rs7006584
Chromosome Location	chr8:95738879-95738880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95651198..95654140-chr8:95736367..95739273,3	MCF-7	breast:
2	chr8:95728931..95733735-chr8:95735785..95738955,5	K562	blood:

Variant related genes	Relation type
ENSG00000156162	Chromatin interaction
ENSG00000104413	Chromatin interaction
ENSG00000261437	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2554404	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55824750	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58384068	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7010617	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7017730	1.00[AMR][1000 genomes]
rs73695602	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697003	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697005	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697019	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697021	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73697022	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7824072	1.00[AMR][1000 genomes]
rs7837744	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv611751	chr8:95721435-95742394	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95732800-95739200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:95732800-95739600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr8:95732800-95761400	Weak transcription	Spleen	Spleen
4	chr8:95732800-95780400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr8:95733000-95739600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:95733000-95744600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:95733000-95747600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:95733000-95761600	Weak transcription	Aorta	Aorta
9	chr8:95733000-95784400	Weak transcription	Esophagus	oesophagus
10	chr8:95733000-95803800	Weak transcription	Psoas Muscle	Psoas
11	chr8:95733000-95805200	Weak transcription	Colonic Mucosa	Colon
12	chr8:95733200-95739600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr8:95733200-95739800	Weak transcription	Primary T cells from cord blood	blood
14	chr8:95733200-95739800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr8:95733200-95739800	Weak transcription	HSMMtube	muscle
16	chr8:95733200-95740000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr8:95733200-95740400	Weak transcription	Stomach Mucosa	stomach
18	chr8:95733200-95744800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr8:95733200-95752000	Weak transcription	Primary B cells from cord blood	blood
20	chr8:95733200-95774600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr8:95733200-95805000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr8:95733400-95739600	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:95733400-95739800	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr8:95733400-95743600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:95733400-95752000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr8:95733400-95783800	Weak transcription	Gastric	stomach
27	chr8:95733400-95784800	Weak transcription	Small Intestine	intestine
28	chr8:95733600-95739000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:95733600-95739200	Weak transcription	Fetal Intestine Large	intestine
30	chr8:95733600-95740200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr8:95733600-95751800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:95733600-95753400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:95733600-95760200	Weak transcription	Thymus	Thymus
34	chr8:95733600-95779400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr8:95733600-95782600	Weak transcription	Brain Substantia Nigra	brain
36	chr8:95733600-95809400	Weak transcription	Rectal Smooth Muscle	rectum
37	chr8:95733800-95739000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr8:95733800-95739000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr8:95733800-95739000	Weak transcription	Fetal Stomach	stomach
40	chr8:95733800-95739000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr8:95733800-95739200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr8:95733800-95739200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr8:95733800-95739200	Weak transcription	Fetal Brain Female	brain
44	chr8:95733800-95739600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr8:95733800-95739800	Weak transcription	Brain Germinal Matrix	brain
46	chr8:95733800-95740400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr8:95733800-95751800	Weak transcription	NHEK	skin
48	chr8:95733800-95770400	Weak transcription	Brain Hippocampus Middle	brain
49	chr8:95733800-95783600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr8:95733800-95806400	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links